Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H06f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029775-1|AAH29775.1|  210|Homo sapiens transmembrane protein 6...    29   9.9  
AL590440-1|CAH70359.1|  210|Homo sapiens novel protein protein.        29   9.9  

>BC029775-1|AAH29775.1|  210|Homo sapiens transmembrane protein 61
           protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 433 LMSVSF*CCIALRSLRILYLYWNVRSGVSN-LELHRYHWIKDVIFLS 296
           L SVSF CC A   L ++ L W+V++ +        YH  +D+ +L+
Sbjct: 66  LRSVSFVCCGAGGLLLLIGLLWSVKASIPGPPRWDPYHLSRDLYYLT 112


>AL590440-1|CAH70359.1|  210|Homo sapiens novel protein protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 433 LMSVSF*CCIALRSLRILYLYWNVRSGVSN-LELHRYHWIKDVIFLS 296
           L SVSF CC A   L ++ L W+V++ +        YH  +D+ +L+
Sbjct: 66  LRSVSFVCCGAGGLLLLIGLLWSVKASIPGPPRWDPYHLSRDLYYLT 112


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,208,601
Number of Sequences: 237096
Number of extensions: 1381042
Number of successful extensions: 5320
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5320
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)