Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GA...    29   1.5  
AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GA...    29   1.5  
AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion def...    29   1.5  
Z48045-9|CAA88099.4|  309|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z29117-7|CAA82379.1|  159|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z92785-5|CAB54232.2|  300|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL021504-3|CAB54474.2|  300|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GABA
           receptor EXP-1A protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 352 VSNLELHRYHWIKDVIFLS*IIY**IYMFWLYTKL*IV 239
           ++   +HR+HWI  ++F    +   ++ F +Y  L IV
Sbjct: 478 ITQRTMHRFHWISQMLFFFGFVIFCLFYFLIYPNLHIV 515


>AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GABA
           receptor EXP-1B protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 352 VSNLELHRYHWIKDVIFLS*IIY**IYMFWLYTKL*IV 239
           ++   +HR+HWI  ++F    +   ++ F +Y  L IV
Sbjct: 484 ITQRTMHRFHWISQMLFFFGFVIFCLFYFLIYPNLHIV 521


>AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion
           defective (defecation)protein 1 protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 352 VSNLELHRYHWIKDVIFLS*IIY**IYMFWLYTKL*IV 239
           ++   +HR+HWI  ++F    +   ++ F +Y  L IV
Sbjct: 484 ITQRTMHRFHWISQMLFFFGFVIFCLFYFLIYPNLHIV 521


>Z48045-9|CAA88099.4|  309|Caenorhabditis elegans Hypothetical
           protein C41C4.2 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +3

Query: 69  QL*NFNKII*HIVKHNFMGHWNLHIISNFVLYCHCTTLSEVD 194
           +L  F  II ++ ++ F  H+NL ++  + ++ +CT L  V+
Sbjct: 32  ELFEFAAIIFNMSRYQF--HFNLKVVVGYAIFAYCTLLLAVE 71


>Z29117-7|CAA82379.1|  159|Caenorhabditis elegans Hypothetical
           protein C48B4.7 protein.
          Length = 159

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 145 MICRFQCPIKLCFTICQIILLKFYSCMLFY 56
           ++C F  PIKL   + Q+I +    CML+Y
Sbjct: 16  LLCGF-FPIKLAVLLVQLIAIVIQFCMLYY 44


>Z92785-5|CAB54232.2|  300|Caenorhabditis elegans Hypothetical
           protein F31E9.6 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 320 PMIPMQFQIRDPAP---YVPIQIKNSQRSQCDTTSKTNTHQ 433
           P+ P+Q + R PAP    +P +++ ++R + + T  +   Q
Sbjct: 253 PLFPVQIRARPPAPTRTIIPSEVQETERVKLEPTDNSYEEQ 293


>AL021504-3|CAB54474.2|  300|Caenorhabditis elegans Hypothetical
           protein F31E9.6 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 320 PMIPMQFQIRDPAP---YVPIQIKNSQRSQCDTTSKTNTHQ 433
           P+ P+Q + R PAP    +P +++ ++R + + T  +   Q
Sbjct: 253 PLFPVQIRARPPAPTRTIIPSEVQETERVKLEPTDNSYEEQ 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,325,478
Number of Sequences: 27780
Number of extensions: 230783
Number of successful extensions: 504
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)