Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308H05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 190 4e-49
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 190 6e-49
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 174 3e-44
01_06_0579 + 30379243-30379617 29 1.7
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 2.3
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 29 3.0
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 4.0
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 28 4.0
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 5.2
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 6.9
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 27 9.1
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 27 9.1
09_02_0181 - 5425833-5426527,5426667-5429397 27 9.1
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 27 9.1
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 27 9.1
02_05_0718 + 31203358-31203717,31203826-31204011 27 9.1
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 9.1
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 190 bits (464), Expect = 4e-49
Identities = 98/178 (55%), Positives = 124/178 (69%), Gaps = 8/178 (4%)
Frame = +2
Query: 2 KVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM- 178
K +RT +S+D+ T + FN ++L+RLFMS+ NRPP+S+ RL R M
Sbjct: 13 KTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRFME 72
Query: 179 -KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQ 343
K P R + IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ AGGE LTFDQ
Sbjct: 73 GKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQ 132
Query: 344 LALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 511
LALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+KG EKAR R +
Sbjct: 133 LALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRRNS 190
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 190 bits (463), Expect = 6e-49
Identities = 97/172 (56%), Positives = 120/172 (69%), Gaps = 2/172 (1%)
Frame = +2
Query: 2 KVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHMK 181
K +RT +S D+ T + FN ++L+RLFMS+ NRPP+S+ RLA+ M+
Sbjct: 13 KTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKFME 72
Query: 182 KPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 361
E IAV+VGTVT+D R+ +IPKM V AL TE ARARI+ AGGE LTFDQLALRAP
Sbjct: 73 GK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAP 131
Query: 362 TGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 511
G+ TVL++G +NAREAVRHFG APG P SHTKPYVR+KG EKAR R +
Sbjct: 132 LGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNS 183
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 174 bits (424), Expect = 3e-44
Identities = 97/189 (51%), Positives = 121/189 (64%), Gaps = 19/189 (10%)
Frame = +2
Query: 2 KVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHMK 181
K +RT KS D+ T + FN ++LRRLFMS+ NRPP+S+ RL R M+
Sbjct: 13 KTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRFME 72
Query: 182 KPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 361
+E IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ GGE LTFDQLALRAP
Sbjct: 73 G--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAP 130
Query: 362 TGKKT-----------------VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH-- 484
G+ T VL++G +NAREAV+HFGPAPG P S+TKPYVR+KG
Sbjct: 131 LGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKF 190
Query: 485 EKARPSRRA 511
EKAR R +
Sbjct: 191 EKARGRRNS 199
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -1
Query: 248 CTVSRHL*LSPLPRQSNPHELASS 177
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 219 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 115
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 86 NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 262
N K N VL L +S+ + P ++V L H + P +V+GT T+D + +
Sbjct: 21 NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79
Query: 263 TVAALHVTEKARARILAAGGEI 328
AAL + + A AAGG +
Sbjct: 80 ADAALPLPPRLAAAAAAAGGAV 101
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 316 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 218
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -2
Query: 487 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQ 308
F+ +G GF++ + +V + S+ + LY + A SQLI + + +S
Sbjct: 455 FLLMGIGDGFALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAGSFLSSQLITAVDRVTSHG 514
Query: 307 NACTSFFG-NMKSSHRHLRY 251
A +FG ++ SS L Y
Sbjct: 515 GAAAGWFGKDLNSSRLDLFY 534
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 330 LLLISWLFVLRLARRQYWYKVSEML 404
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 212 VVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 352
++G++ DV I + VAA+ V + R + GG +L Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 321 PPAAKMRARAFSVT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 190
P + RAR+ S+T A +V F + T TTTA K R
Sbjct: 293 PRPSHRRARSMSITGSAKSVRFPFTRQASRSTTTTTTTAFKVIR 336
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 201 KPSRVGFFMWRAKRDTEIG 145
+PS+V FFMW A+R+ G
Sbjct: 899 EPSKVKFFMWLAEREVSHG 917
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/67 (31%), Positives = 26/67 (38%)
Frame = +2
Query: 311 AAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEK 490
AAGGE + A+ A G L PAP PR+ + R K
Sbjct: 1053 AAGGETGSATD-AVWAAGGATRALASAAATRVGVAAATAPAPALPRAPARCRCRMACRRK 1111
Query: 491 ARPSRRA 511
ARP+ RA
Sbjct: 1112 ARPAGRA 1118
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 109 STPALYEPYQPATNLCV-SFGAPHEEANS 192
S PA ++ Y+P+TNL + S+ P+ A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 355 CSDWQEDSTGTRSAKCS*GSASLWPCSRSTALSH 456
CS E + G +C G W C +T L+H
Sbjct: 365 CSKPIEKNGGCNHVRCKCGQCLCWLCGAATGLAH 398
>02_05_0718 + 31203358-31203717,31203826-31204011
Length = 181
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 196 GFDCRGSGDSHK*RETVQDTEDDGGCSSCYRK 291
G D GSGD K R D +DDG Y+K
Sbjct: 122 GDDDDGSGDERKPRYKKHDDDDDGERKPRYKK 153
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 342 SWLFVLRLARRQYWYKVSEMLVRQCV-TLALLQEHRALTLNP 464
SW V L + Q+WY VS+ L + A + + + LNP
Sbjct: 199 SWADVELLKKHQHWYNVSKTLAEKAAWDFAAKEGLQLVALNP 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,130
Number of Sequences: 37544
Number of extensions: 352994
Number of successful extensions: 1083
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -