Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308H03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 191 5e-50
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 73 3e-14
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 72 5e-14
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 62 4e-11
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 58 1e-09
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 56 2e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 56 3e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 54 1e-08
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 50 2e-07
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 50 2e-07
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 49 4e-07
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 49 4e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 48 8e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 46 3e-06
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 44 1e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 42 6e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 42 7e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 7e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 41 1e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 40 3e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 4e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 7e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 37 0.002
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 36 0.003
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 34 0.015
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.034
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.034
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 29 0.56
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 28 0.73
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 0.97
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 0.97
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 28 0.97
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 27 1.3
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.2
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 3.0
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 3.0
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 3.0
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 6.8
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 6.8
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 25 9.0
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 25 9.0
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 191 bits (466), Expect = 5e-50
Identities = 90/146 (61%), Positives = 120/146 (82%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV + + + A++A ELN KE +GK LYVGRAQKK ER++EL++++EQ+K E++ +YQG
Sbjct: 305 FVNYANHECAQKAVDELNDKEY-KGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQG 363
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTE 357
VNL++KNL D +DDERL+ EF+ FGTITSAK+M E G+SKGFGFVC+++PEEA KAVTE
Sbjct: 364 VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTE 423
Query: 358 MNGRIVGTKPLYVALAQRKEDRKAHL 435
MN R++ KPLYVALAQRKE R++ L
Sbjct: 424 MNQRMLAGKPLYVALAQRKEVRRSQL 449
Score = 80.6 bits (190), Expect = 1e-16
Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F+ ++A A +NG L+ K +YVG + ERQ K E LK+
Sbjct: 212 FVHFDSVESANAAIEHVNGM-LLNDKKVYVGHHVSRRERQS----KVEALKANF------ 260
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTE 357
N+Y+KNLD I ++ F FG ITS ++ + + +GFGFV +++ E A KAV E
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 358 MNGRIVGTKPLYVALAQRKEDRKAHL 435
+N + K LYV AQ+K +R+ L
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEEL 346
Score = 68.9 bits (161), Expect = 4e-13
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 360
N+++KNLD ID++ L F+ FG I S KV +++ G +KG+GFV F S E A A+ +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 361 NGRIVGTKPLYVALAQRKEDRKA 429
NG ++ K +YV + +R++
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQS 251
Score = 41.9 bits (94), Expect = 6e-05
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 165
FV + P+ A +A E+N + ++ GKPLYV AQ+K R+ +L+ + + RL
Sbjct: 408 FVCYTTPEEANKAVTEMN-QRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRL 461
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 72.9 bits (171), Expect = 3e-14
Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Frame = +1
Query: 184 NLYVKNLDDTIDD--ERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 351
NLYVKNLDDT+ +L F+PFG+I S+ + G SKG+GFV F E A +A
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAK 442
Query: 352 TEMNGRIVGTKPLYVALAQRKEDR 423
+NG +VG K ++V A+RK DR
Sbjct: 443 DTLNGMMVGKKRIFVCFAERKSDR 466
Score = 33.5 bits (73), Expect = 0.020
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERLTRYQ 177
FVAF +AA RA LNG +V K ++V A++K++R + L+ F + SE+ +
Sbjct: 429 FVAFRQIEAAVRAKDTLNGM-MVGKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTAQQD 487
Query: 178 GVNLYVK 198
L+VK
Sbjct: 488 NKALFVK 494
Score = 29.9 bits (64), Expect = 0.24
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-----RSKGF---------GFVCFS 324
+YV N+D + DE + K F+ +G + S L D ++K F GFV F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 325 SPEEATKAVTEMNGRIVGTKPLYV 396
+ E + + + G +G + L +
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTI 102
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 72.1 bits (169), Expect = 5e-14
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Frame = +1
Query: 184 NLYVKNLDDTI--DDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 351
NL+VKNLDD I + ++L + F+ FG I S + SKG+GFV FS P EA +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 352 TEMNGRIVGTKPLYVALAQRKEDRKAHLT 438
+NG + G K L+V A+++EDRK L+
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLS 508
Score = 35.5 bits (78), Expect = 0.005
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Frame = +1
Query: 151 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGT------ITSAKVMLEDGRSKG-FG 309
K++R T+ +++YV NL T L + F PFG ++ K D +S F
Sbjct: 10 KNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFA 69
Query: 310 FVCFSSPEEATKAVTEMNG 366
F+ F + A A+ +NG
Sbjct: 70 FITFENKCSADNAIASLNG 88
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQL----KSERLT 168
F+ FE+ +A+ A LNG +G L V + +L+ +Q+ +
Sbjct: 70 FITFENKCSADNAIASLNGSSF-QGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKAKI 128
Query: 169 RYQGVNLYVKNLDDTIDDERL 231
R+ + Y K T+ + R+
Sbjct: 129 RFSKIEKYTKETRPTVSEVRV 149
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 62.5 bits (145), Expect = 4e-11
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 351
G NL+V NLD +D+ L F+ G + A + D GRSKG+GFV + S E A A+
Sbjct: 98 GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157
Query: 352 TEMNGRIVGTKPLYVALAQRKEDR 423
MN + + KP+ V+ A ++E +
Sbjct: 158 EAMNNQFLMNKPITVSYAFKREGK 181
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 57.6 bits (133), Expect = 1e-09
Identities = 25/74 (33%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 363
L+V NL + ++DE L + F+ + ++ KV+ + +G+++GFGFV F ++ KA E N
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91
Query: 364 GRIVGTKPLYVALA 405
G+ +G++P+ ++ A
Sbjct: 92 GKYIGSRPVKLSRA 105
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRA 99
FV+F+D D +A E NGK + +P+ + RA
Sbjct: 74 FVSFKDSDQFLKAWREKNGK-YIGSRPVKLSRA 105
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 56.4 bits (130), Expect = 2e-09
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
+V F D+ + A I L+GK L+ G P+ V + + R+ + + S + ++
Sbjct: 285 YVEFCHEDSVQ-AAIALSGKRLL-GLPVIVQLTEAEKNRKAREAAELARAASAEIPFHR- 341
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTE 357
L V N+ + DE ++ F PFG I + +D RSKGFG++ + +P A A+ +
Sbjct: 342 --LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEK 399
Query: 358 MNGRIVGTKPLYVALAQRK 414
MNG + + + V L K
Sbjct: 400 MNGFDLAGRNMRVCLGNDK 418
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 56.0 bits (129), Expect = 3e-09
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 15/108 (13%)
Frame = +1
Query: 97 AQKKAERQKELKRKFEQLKSERLTRY--------QGVNLYVKNLDDTIDDERLRKEFAPF 252
++ ++ + E KRK E ER + + ++V L +DD+ L +EF +
Sbjct: 227 SESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEY 286
Query: 253 GTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 375
GTI A+V++ + GRSKG+G+V F +PE A AV E++GR+V
Sbjct: 287 GTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMV 334
Score = 52.8 bits (121), Expect = 3e-08
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
+V FE P+AA +A + NG + ++G+ + + + + + ++ ++L+
Sbjct: 308 YVDFETPEAA-KAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSD 366
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 354
++V NL ++ L F G I S ++ + GR KGFG+V FS + A K V
Sbjct: 367 T-VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV- 424
Query: 355 EMNGRIVGTKP 387
EMNG + +P
Sbjct: 425 EMNGHFIAGRP 435
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 351
G +L+V + + ++ L++ F+ FGT+T ++M E S+GFGF+ FS+ EEAT A+
Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159
Query: 352 TEMNGRIVGTKPLYVALAQR 411
+N + + L V A+R
Sbjct: 160 DNLNSQEFYGRVLNVQKAKR 179
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 50.4 bits (115), Expect = 2e-07
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Frame = +1
Query: 28 AERACIELNGKELVEGKPLYV---GRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 198
+++ ++ KEL+E K A K Q++L + E L++++ + ++YV
Sbjct: 2 SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKES-IDAQSVYVG 60
Query: 199 NLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRI 372
N+D ++ E L+ FA G++ ++ + G KGF ++ FS P A+ +NG +
Sbjct: 61 NVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL-LNGSM 119
Query: 373 VGTKPLYV 396
+ +PL V
Sbjct: 120 LHERPLKV 127
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 363
+YV NL D L F G++ A++ E GRSKGFG V F + +A ++ ++N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 364 GRIVGTKPLYVALA 405
G G +PL ++ A
Sbjct: 342 GYRYGGRPLQLSYA 355
Score = 31.1 bits (67), Expect = 0.10
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 229 LRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 405
L+ F G++ A + + ++GRS+G G V SS +EA A+ ++ + L V L
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL- 257
Query: 406 QRKEDRKAH 432
DR AH
Sbjct: 258 ----DRFAH 262
Score = 30.3 bits (65), Expect = 0.18
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV-TEM 360
+YV NL + L++ G + + +++ L +G SKG + +S+ EEA A+ T
Sbjct: 68 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127
Query: 361 NGRIVG 378
N + +G
Sbjct: 128 NQKFMG 133
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 49.2 bits (112), Expect = 4e-07
Identities = 23/82 (28%), Positives = 48/82 (58%)
Frame = +1
Query: 172 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 351
Y+G LYV N+D ++++ + F +G + S ++ + KGFG+V ++ ++A A+
Sbjct: 754 YEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL 813
Query: 352 TEMNGRIVGTKPLYVALAQRKE 417
+ G+ +G + L V L++ +E
Sbjct: 814 SAA-GKQLGNRVLNVVLSKPRE 834
Score = 32.3 bits (70), Expect = 0.045
Identities = 27/89 (30%), Positives = 46/89 (51%)
Frame = +1
Query: 130 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG 309
K+ FEQ+KS+ +L V N+D T+++ RLR F +G + +V+L +G
Sbjct: 865 KKSFEQIKSK--------SLGVTNVDGTVNEARLRSLFESYGKL--YRVVLHP-EHEG-A 912
Query: 310 FVCFSSPEEATKAVTEMNGRIVGTKPLYV 396
V F +A KA + G +G + L++
Sbjct: 913 VVEFLDIHDAGKASLALEGHEIGGRLLHI 941
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 49.2 bits (112), Expect = 4e-07
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = +1
Query: 148 LKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLEDGR--SKGFGFVC 318
L+ + +++ +++V +L +++ + FA + + SAK+M + S+G+GFV
Sbjct: 175 LREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVR 234
Query: 319 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 435
F+ + A+ EM G+I G +P+ V LA K KAH+
Sbjct: 235 FTDENDQKSALAEMQGQICGDRPIRVGLATPKS--KAHV 271
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 48.0 bits (109), Expect = 8e-07
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +1
Query: 193 VKNLDDTIDDERLR---KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 363
+K + D + R R + P+ I K+ E R +GFGFV F++ E+ ++A+ EMN
Sbjct: 221 LKEMFDAYNPTRARIAVRSLPPY-IIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMN 279
Query: 364 GRIVGTKPLYVALAQRKEDRK 426
G+ VG L V A +ED++
Sbjct: 280 GKQVGDLTLVVKSAVFREDKQ 300
Score = 30.7 bits (66), Expect = 0.14
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS------KGFGFVCFSSPEEATKA 348
++V L + +R F GT+ + R G FV F++ E+ KA
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 349 VTEMNGRIVGTKPLYVALAQRKEDR 423
+ +NG+ + + + V A+ +++
Sbjct: 106 IETLNGKTLDDREIVVQKARPVQEQ 130
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 144
FV+F + + RA E+NGK+ V L V A + ++Q + K E
Sbjct: 262 FVSFANAEDQSRAIEEMNGKQ-VGDLTLVVKSAVFREDKQNDENEKNE 308
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 46.0 bits (104), Expect = 3e-06
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F + A+RA EL K+L G+ L + A + ++ E+ + + + +
Sbjct: 50 FVTFSMLEDAQRAAKELKNKKL-HGRILRLDFATPR--KRSEVDTDQNKAVKKTIRQDNR 106
Query: 181 VNLYVKNLDDTIDD-ERLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVT 354
L ++NL +I + L F+ FG + K+ + G R GF FV + A +A+
Sbjct: 107 PRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMN 166
Query: 355 EMNGRIVGTKPLYVALAQRKE 417
+NG + +P+ V A K+
Sbjct: 167 SLNGTEIDGRPIAVDWAVSKD 187
Score = 38.3 bits (85), Expect = 7e-04
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATK 345
+G+ + ++ +D K G + AKV E GRSKGFGF+ F S + A
Sbjct: 495 KGLRANITEEEENLDKGHRLKRGKSGGVLKQAKVETEKAGAGRSKGFGFMQFISHKYALM 554
Query: 346 AVTEMNGRIVGTKPL 390
A+ +NGR + K +
Sbjct: 555 ALRWLNGREITVKKI 569
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 44.0 bits (99), Expect = 1e-05
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F + A + + G L +G+PL + A K+ + + R
Sbjct: 228 FVRFSSEKEQQHALMHMQGY-LCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPN 286
Query: 181 VNL----------YVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSP 330
+L +V L + ++ L+ F PFG I + K+ KG GFV +S
Sbjct: 287 QDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF----GKGCGFVQYSEK 342
Query: 331 EEATKAVTEMNGRIVGTKPLYVA 399
A KA+ M G +VGT + +A
Sbjct: 343 SAAEKAINTMQGALVGTSHIRLA 365
Score = 42.3 bits (95), Expect = 4e-05
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 354
+++V +L T +D L F + + TSAK++++ G S+ +GFV FSS +E A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 355 EMNGRIVGTKPLYVALAQRK 414
M G + +PL +++A K
Sbjct: 243 HMQGYLCQGRPLRISVASPK 262
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 41.9 bits (94), Expect = 6e-05
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 360
+Y+ NL + ++++ + PFG + S +++ + DG SKGF F F +P +A A++ +
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 361 NGR 369
+G+
Sbjct: 372 DGK 374
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 41.5 bits (93), Expect = 7e-05
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Frame = +1
Query: 1 FVAFEDPDAAERA--CIE--LNGKE-LVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 165
+V F DA + A C E LNG+ L++ + GR K A K ++S +
Sbjct: 169 YVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLS----KTASIQSSK- 223
Query: 166 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LED-GRSKGFGFVCFSSPEEA 339
+ L+V NLD D L++ F G I ++M ED G+ KGFGFV F +
Sbjct: 224 -KEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTC 282
Query: 340 TKAV 351
KA+
Sbjct: 283 MKAM 286
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 41.5 bits (93), Expect = 7e-05
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +1
Query: 142 EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-----GR--SK 300
E++ +E + +YVKNL+ + E +K F P SA + + G+ S
Sbjct: 606 EKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSM 665
Query: 301 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 435
GFGFV F A A+ MNG ++ L + L+ + D A +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEV 710
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
L+++NL + ++ L+ F PFG + + ++ KGF ++ F ++A +A E+
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 361 NGRIVGTKPLYVALAQRK 414
+ + + L+V A+ +
Sbjct: 385 DAKPFQGRLLHVLPAKAR 402
Score = 30.3 bits (65), Expect = 0.18
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPF----GTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV 351
+ +KN+ D E+L IT V ++G S+ F F+ F + E+A KA+
Sbjct: 4 IIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAI 63
Query: 352 TEMNGRIVGTKPLYV--ALAQRKEDRK 426
+N V T + V AL R + K
Sbjct: 64 RYLNKSYVETSRIEVHRALDYRSANEK 90
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE- 357
+++ L+ D+ LR F FG + VM + GRS+GFGF+ F +P+ + +++
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 358 --MNGRIVGTK 384
++G+I+ K
Sbjct: 225 HHLDGKIIDPK 235
Score = 36.7 bits (81), Expect = 0.002
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 360
++V + +E R F FG + A +M++ GR +GFGFV + + E A +A
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQ 307
Query: 361 NGRIVGTKPLYVALAQRKED-RKAH 432
+ KP+ V A K R +H
Sbjct: 308 PYITIHGKPVEVKRATPKASLRDSH 332
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 39.5 bits (88), Expect = 3e-04
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 357
N+Y++ L DE L FG ++S+K ++ E KG+GF CF + A ++
Sbjct: 297 NVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISA 356
Query: 358 M 360
M
Sbjct: 357 M 357
Score = 29.1 bits (62), Expect = 0.42
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 354
+ NLY+ NL ++ + F P I++ + +S+G GF + A +
Sbjct: 382 ESTNLYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIIN 441
Query: 355 EMNGRIV--GTKPLYVALAQRKEDRK 426
+ N ++ PL + A + +K
Sbjct: 442 KFNNFVLDPALPPLQIRFADSTDQKK 467
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 39.1 bits (87), Expect = 4e-04
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
+YV N+ + +E++ F G + S ++++ E G+ KG+GF + P A AV +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 361 NGRIVGTKPLYV 396
N GT+ L V
Sbjct: 67 NNYDAGTRRLRV 78
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 38.3 bits (85), Expect = 7e-04
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 169 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 342
R L V NL D +E LR F FG I + E GR+KGF FV + + A
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAI 257
Query: 343 KAVTEMNG 366
KA ++G
Sbjct: 258 KARDRLDG 265
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 351
N+Y+ N DD++ ERL+++F FG I R K FV F+S A A+
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEIEYVNFF----REKNCAFVNFTSLASAINAI 466
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 286 DGRSKGFGFVCFSSPEEATKAVTEMNGRIV-GTKPLYVAL 402
+GRSKG + FS P +AT+A + GR+V GT+ + V +
Sbjct: 92 NGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 33.9 bits (74), Expect = 0.015
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 363
LYV D + L EF PFG + + + R S+ F FV + +A A E++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 364 GR 369
GR
Sbjct: 69 GR 70
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.034
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 348
+G + V + +E++ FA FG + + + L+ G KG+ + +++ E+A KA
Sbjct: 8 EGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKA 67
Query: 349 VTEMNGRIVGTK 384
V E N ++ K
Sbjct: 68 VDEKNLSLLDEK 79
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 32.7 bits (71), Expect = 0.034
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
+Y+ NLD ++++ + F+ FG ++ E G+SKGF F+ + AV M
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 28.7 bits (61), Expect = 0.56
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTIT--SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 360
+ VKN+ +++ + L F G + ++G +G F F PEEA V +
Sbjct: 204 IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTL 263
Query: 361 NGRIVGTKPLYV 396
NG + + L V
Sbjct: 264 NGYEINGRRLRV 275
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 28.3 bits (60), Expect = 0.73
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTIT--SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 360
+ +KN+ ++ E L K F + ++G +G F F SPEEA V +
Sbjct: 234 IVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQVL 293
Query: 361 NG 366
NG
Sbjct: 294 NG 295
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSA--KVMLEDGRSKGFGFVCFSSPEEATKAVTEM 360
+ V+NL + E + + F +G I + + +KG+ ++ + ++A AV +M
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 361 NGRIVGTKPLYVAL 402
N + + L+V++
Sbjct: 161 NNAELDGEELFVSI 174
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +1
Query: 112 ERQKELKRKFEQL--KSERLTRYQGVNL--YVKNLDDTID 219
++++ELK KFE+L K+ER R QG L + DD ID
Sbjct: 70 KKEEELKSKFEKLRQKNERRRRTQGKTLAETLAEEDDQID 109
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 124 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR-----KEFAPFGTITSAKVMLED 288
E + F+Q E ++ +NLY + DD D+E + + PF + S K ++ D
Sbjct: 186 EERAAFKQQIREEFVKHD-INLYPYDSDDA-DEEEINLNAAVRNLIPFAVVGSEKAIIVD 243
Query: 289 GR 294
GR
Sbjct: 244 GR 245
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 157 QISVVQTYASTPFDVQLSFVHVQHREAYPQLALCHSIQCKLFQQHLGL 14
++S++Q + PF V L V + + QL C + LF LGL
Sbjct: 338 EVSILQRLQACPFVVNLVNVWSYNDNIFLQLDYCENGDLSLFLSELGL 385
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 43 IELNGKELVEG--KPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI 216
++L +LVE K L+V + K E ++ K+ E LKS R +N Y+ L + I
Sbjct: 338 VDLETPKLVEELTKQLHVAESTLK-ENSEKFKQNSESLKS----RVDNLNDYITKLQNEI 392
Query: 217 DDER 228
D+ R
Sbjct: 393 DECR 396
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 136 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE--FAPFGTIT 264
KF Q+ T VN + NLD I+D + + + F P TIT
Sbjct: 418 KFAQVSDMCSTEIPWVNFFCDNLDICIEDVQFKSKAFFPPTVTIT 462
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +1
Query: 259 ITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 408
+TS +++++ RS+GFG+V F + + + A+ ++G + +P+ + +A+
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAALA-LSGEDLMGRPVRITVAE 168
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEE 336
+YV L +I+ L F+ FG++++ +++ + G + F ++ F + E+
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDED 59
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.0 bits (52), Expect = 6.8
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYV---GRAQKKAERQKEL---KRKFEQLKSER 162
F FE+ D A+ EL+GK++++ V + +K E +R+F++ + R
Sbjct: 95 FADFENVDGADLCVQELDGKQILKNHTFVVRKLNQLEKAFSTPDEFSFEEREFKEREHLR 154
Query: 163 --LTRYQGVNLYVKNLDDTIDDERLRKEFAP 249
LT Y G + ++ + + RK P
Sbjct: 155 SWLTDYYGRDQFISYYGNRVSVNWNRKSDVP 185
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 418 PPCVELVQHTMV*FLQYVHSS 356
PP +E +Q T + LQYVH +
Sbjct: 732 PPQLENIQGTTIQLLQYVHDN 752
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +1
Query: 31 ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDD 210
E+A +G + G PL K ER K+ K+K + S V+ V + D
Sbjct: 107 EKAAATKDGFFVFSG-PLVAEGDTVKIERSKKTKKKKKTSLSNATHPAPAVSAVVASADA 165
Query: 211 TIDDER 228
+ DD R
Sbjct: 166 SFDDSR 171
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 100 QKKAERQKELKRKFEQLKSERLTRYQGVNL 189
+K E+Q EL R+ L+ R + G+N+
Sbjct: 180 RKDREKQLELTRRLSHLQKRRELKAAGINI 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,744
Number of Sequences: 5004
Number of extensions: 35183
Number of successful extensions: 184
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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