Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308H03f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 181 2e-46
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 179 1e-45
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 171 2e-43
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 171 2e-43
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 163 6e-41
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 147 3e-36
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 145 2e-35
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 120 8e-28
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 1e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 1e-10
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 62 2e-10
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 62 2e-10
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 61 5e-10
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 60 9e-10
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 60 9e-10
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 59 2e-09
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 59 2e-09
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 59 2e-09
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 58 3e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 58 4e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 58 4e-09
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 58 4e-09
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 58 5e-09
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 58 5e-09
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 58 5e-09
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 58 5e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 57 8e-09
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 57 8e-09
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 57 8e-09
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 56 1e-08
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 56 1e-08
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 56 1e-08
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 56 1e-08
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 56 1e-08
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 55 3e-08
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 55 3e-08
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 55 3e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 54 4e-08
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 54 4e-08
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 54 6e-08
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 54 8e-08
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 54 8e-08
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 53 1e-07
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 53 1e-07
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 53 1e-07
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 53 1e-07
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 52 2e-07
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 52 2e-07
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 52 3e-07
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 52 3e-07
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 52 3e-07
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 52 3e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 52 3e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 52 3e-07
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 51 4e-07
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 51 4e-07
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 51 4e-07
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 51 5e-07
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 51 5e-07
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 51 5e-07
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 51 5e-07
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 50 7e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 50 9e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 50 9e-07
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 50 9e-07
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 50 1e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 50 1e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 49 2e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 49 2e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 49 2e-06
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 49 2e-06
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 48 3e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 48 3e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 48 3e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 48 4e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 48 4e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 48 5e-06
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 48 5e-06
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 47 7e-06
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 47 7e-06
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 47 7e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 47 9e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 47 9e-06
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 45 3e-05
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 44 6e-05
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 44 6e-05
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 44 6e-05
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 44 6e-05
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 44 6e-05
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 44 6e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 44 8e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 8e-05
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 44 8e-05
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 43 1e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 43 1e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 43 1e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 43 1e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 43 1e-04
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 43 1e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 43 1e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 43 1e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 43 1e-04
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 42 2e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 2e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 42 2e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 42 2e-04
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 42 3e-04
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 42 3e-04
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 42 3e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 41 4e-04
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 41 4e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 41 4e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 41 4e-04
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 40 8e-04
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 40 8e-04
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 40 8e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 40 8e-04
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 40 8e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 40 8e-04
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 40 8e-04
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 40 0.001
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 40 0.001
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 40 0.001
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 40 0.001
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 40 0.001
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 40 0.001
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 40 0.001
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 40 0.001
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 39 0.002
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 39 0.002
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 39 0.002
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 38 0.003
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 38 0.003
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.004
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.004
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 38 0.004
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 38 0.004
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 37 0.007
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 37 0.007
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 37 0.007
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 37 0.007
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 37 0.009
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 37 0.009
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 37 0.009
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 36 0.012
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 36 0.012
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 36 0.012
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 35 0.029
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 35 0.029
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 35 0.029
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 35 0.029
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 35 0.038
At2g15500.1 68415.m01774 hypothetical protein 34 0.050
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 34 0.050
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 34 0.067
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 34 0.067
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 34 0.067
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 34 0.067
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 34 0.067
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.088
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.088
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.088
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 33 0.088
At4g10610.1 68417.m01735 RNA-binding protein, putative 33 0.12
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.12
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.15
At5g24440.1 68418.m02880 RNA-binding protein, putative 33 0.15
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.15
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.15
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 32 0.20
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 32 0.20
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 32 0.20
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 32 0.20
At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical t... 32 0.27
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.27
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.27
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 31 0.36
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.47
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 31 0.47
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.47
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 30 0.82
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 30 1.1
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 30 1.1
At2g38250.1 68415.m04697 DNA-binding protein-related contains si... 29 1.4
At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) / cyclin-d... 29 1.4
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 29 1.9
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 29 1.9
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 29 1.9
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 1.9
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 29 2.5
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 29 2.5
At4g12440.2 68417.m01969 adenine phosphoribosyltransferase, puta... 29 2.5
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 28 3.3
At4g35870.1 68417.m05094 expressed protein 28 3.3
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 28 3.3
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 28 4.4
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro... 28 4.4
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 28 4.4
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 5.8
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 5.8
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 5.8
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 27 5.8
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 27 5.8
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 27 5.8
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 27 7.7
At5g18610.1 68418.m02203 protein kinase family protein contains ... 27 7.7
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 27 7.7
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 27 7.7
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 181 bits (441), Expect = 2e-46
Identities = 91/146 (62%), Positives = 113/146 (77%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV FE+ D A RA LNGK + K +VG+AQKK+ER+ ELK+KFEQ E + QG
Sbjct: 268 FVNFENSDDAARAVDALNGKTF-DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQG 326
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTE 357
NLYVKNLD+++ D++LR+ FAPFGTITS KVM + G S+G GFV FS+PEEAT+A+TE
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITE 386
Query: 358 MNGRIVGTKPLYVALAQRKEDRKAHL 435
MNG+++ TKPLYVALAQRKEDRKA L
Sbjct: 387 MNGKMIVTKPLYVALAQRKEDRKARL 412
Score = 88.6 bits (210), Expect = 2e-18
Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV ++ +AA+ A +LNG L+ K +YVG K +R E++K
Sbjct: 177 FVQYDTDEAAQGAIDKLNGM-LLNDKQVYVGPFVHKLQRDPS----GEKVKF-------- 223
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTE 357
N+YVKNL +++ DE L K F FG TS +M + +G+SKGFGFV F + ++A +AV
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 358 MNGRIVGTKPLYVALAQRKEDRKAHL 435
+NG+ K +V AQ+K +R+ L
Sbjct: 284 LNGKTFDDKEWFVGKAQKKSERETEL 309
Score = 67.7 bits (158), Expect = 4e-12
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Frame = +1
Query: 169 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEAT 342
R GV N+++KNLD +ID + L + F+ FG I S KV ++ G+SKG+GFV + + E A
Sbjct: 128 RKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQ 187
Query: 343 KAVTEMNGRIVGTKPLYV 396
A+ ++NG ++ K +YV
Sbjct: 188 GAIDKLNGMLLNDKQVYV 205
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 153
FVAF P+ A RA E+NGK +V KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 371 FVAFSTPEEATRAITEMNGKMIVT-KPLYVALAQRKEDRKARLQAQFSQMR 420
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTE 357
+LYV +LD T+ D +L + F G + S +V + RS G+G+V +++P++A++A+ E
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 358 MNGRIVGTKPLYVALAQR 411
+N + + + V + R
Sbjct: 106 LNFMALNGRAIRVMYSVR 123
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 179 bits (435), Expect = 1e-45
Identities = 85/146 (58%), Positives = 116/146 (79%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV FE +AA A ++NG L + LYVGRAQKK+ER++EL+RKFEQ + R + QG
Sbjct: 273 FVNFECTEAAASAVEKMNGISLGDDV-LYVGRAQKKSEREEELRRKFEQERINRFEKSQG 331
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTE 357
NLY+KNLDD++DDE+L++ F+ +G +TS+KVML G S+GFGFV +S+PEEA +A++E
Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSE 391
Query: 358 MNGRIVGTKPLYVALAQRKEDRKAHL 435
MNG+++G KPLY+ALAQRKEDR+AHL
Sbjct: 392 MNGKMIGRKPLYIALAQRKEDRRAHL 417
Score = 91.9 bits (218), Expect = 2e-19
Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV FE ++A+ A +LNG L+ K ++VG ++ ER ++ E + R T
Sbjct: 180 FVQFEKEESAQAAIDKLNGM-LMNDKQVFVGHFIRRQERARD-----ENTPTPRFT---- 229
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTE 357
N+YVKNL I ++ LRK F FG I+SA VM + G S+ FGFV F E A AV +
Sbjct: 230 -NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 358 MNGRIVGTKPLYVALAQRKEDRKAHL 435
MNG +G LYV AQ+K +R+ L
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEEL 314
Score = 74.1 bits (174), Expect = 5e-14
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +1
Query: 166 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEA 339
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GRSKG+GFV F E A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 340 TKAVTEMNGRIVGTKPLYVALAQRKEDR 423
A+ ++NG ++ K ++V R+++R
Sbjct: 190 QAAIDKLNGMLMNDKQVFVGHFIRRQER 217
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/52 (42%), Positives = 36/52 (69%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 156
FVA+ +P+ A RA E+NGK ++ KPLY+ AQ+K +R+ L+ F Q+++
Sbjct: 376 FVAYSNPEEALRALSEMNGK-MIGRKPLYIALAQRKEDRRAHLQALFSQIRA 426
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 171 bits (417), Expect = 2e-43
Identities = 83/146 (56%), Positives = 113/146 (77%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F P+AA A ++NG L E LYVGRAQKK++R++EL+RKFEQ + R + QG
Sbjct: 269 FVNFVSPEAAAVAVEKMNGISLGEDV-LYVGRAQKKSDREEELRRKFEQERISRFEKLQG 327
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTE 357
NLY+KNLDD+++DE+L++ F+ +G +TS KVM+ G S+GFGFV +S+PEEA A+ E
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387
Query: 358 MNGRIVGTKPLYVALAQRKEDRKAHL 435
MNG+++G KPLYVALAQRKE+R+AHL
Sbjct: 388 MNGKMIGRKPLYVALAQRKEERQAHL 413
Score = 91.5 bits (217), Expect = 3e-19
Identities = 58/146 (39%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV FE + A+ A +LNG L+ K ++VG ++ +R + +S + +
Sbjct: 176 FVQFEKEETAQAAIDKLNGM-LLNDKQVFVGHFVRRQDRARS--------ESGAVPSF-- 224
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTE 357
N+YVKNL I D+ L+K F +G I+SA VM + G S+ FGFV F SPE A AV +
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 358 MNGRIVGTKPLYVALAQRKEDRKAHL 435
MNG +G LYV AQ+K DR+ L
Sbjct: 285 MNGISLGEDVLYVGRAQKKSDREEEL 310
Score = 74.9 bits (176), Expect = 3e-14
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +1
Query: 166 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEA 339
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GRSKG+GFV F E A
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 340 TKAVTEMNGRIVGTKPLYVALAQRKEDR 423
A+ ++NG ++ K ++V R++DR
Sbjct: 186 QAAIDKLNGMLLNDKQVFVGHFVRRQDR 213
Score = 49.6 bits (113), Expect = 1e-06
Identities = 25/52 (48%), Positives = 35/52 (67%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 156
FVA+ +P+ A A E+NGK ++ KPLYV AQ+K ERQ L+ F Q++S
Sbjct: 372 FVAYSNPEEALLAMKEMNGK-MIGRKPLYVALAQRKEERQAHLQSLFTQIRS 422
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 171 bits (416), Expect = 2e-43
Identities = 86/146 (58%), Positives = 111/146 (76%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV FE+P+ A RA LNGK+ + K YVG+AQKK+ER+ EL R++EQ S+ ++ G
Sbjct: 269 FVNFENPEDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDG 327
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTE 357
+NLYVKNLDDT+ DE+LR+ FA FGTITS KVM + G SKG GFV FS+ EA++ + E
Sbjct: 328 LNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNE 387
Query: 358 MNGRIVGTKPLYVALAQRKEDRKAHL 435
MNG++VG KPLYVALAQRKE+R+A L
Sbjct: 388 MNGKMVGGKPLYVALAQRKEERRAKL 413
Score = 94.3 bits (224), Expect = 4e-20
Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 2/148 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKEL-KRKFEQLKSERLTRYQ 177
FV F+ D+A+ A +LNGK L + K ++VG +K ER+ K KF
Sbjct: 178 FVQFDTEDSAKNAIEKLNGKVLND-KQIFVGPFLRKEERESAADKMKF------------ 224
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 354
N+YVKNL + D+ L+ F +G+I+SA VM + DG+S+ FGFV F +PE+A +AV
Sbjct: 225 -TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVE 283
Query: 355 EMNGRIVGTKPLYVALAQRKEDRKAHLT 438
+NG+ K YV AQ+K +R+ L+
Sbjct: 284 ALNGKKFDDKEWYVGKAQKKSERELELS 311
Score = 74.5 bits (175), Expect = 4e-14
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Frame = +1
Query: 169 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEAT 342
R GV NL+VKNLD ++D++ L + F+ GTI S KV + G+S+G+GFV F + + A
Sbjct: 129 RRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAK 188
Query: 343 KAVTEMNGRIVGTKPLYVALAQRKEDRKA 429
A+ ++NG+++ K ++V RKE+R++
Sbjct: 189 NAIEKLNGKVLNDKQIFVGPFLRKEERES 217
Score = 50.4 bits (115), Expect = 7e-07
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 153
FVAF A R E+NGK +V GKPLYV AQ+K ER+ +L+ +F Q++
Sbjct: 372 FVAFSAASEASRVLNEMNGK-MVGGKPLYVALAQRKEERRAKLQAQFSQMR 421
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 163 bits (396), Expect = 6e-41
Identities = 79/146 (54%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV FE+ D A RA LNG + + K YVGRAQKK+ER+ EL+ ++EQ E ++Q
Sbjct: 73 FVNFENADDAARAVESLNGHKF-DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQS 131
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTE 357
NLYVKNLD +I DE+L++ F+PFGT+TS+KVM + +G SKG GFV F++PEEAT+A+++
Sbjct: 132 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 191
Query: 358 MNGRIVGTKPLYVALAQRKEDRKAHL 435
++G+++ +KPLYVA+AQRKEDR+ L
Sbjct: 192 LSGKMIESKPLYVAIAQRKEDRRVRL 217
Score = 78.2 bits (184), Expect = 3e-15
Identities = 41/102 (40%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Frame = +1
Query: 133 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFG 309
R+ E+ + T++ N+YVKNL ++ D+ L+ F +G ITSA VM + +G+SKGFG
Sbjct: 15 RRQERDSTANKTKF--TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFG 72
Query: 310 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 435
FV F + ++A +AV +NG K YV AQ+K +R+ L
Sbjct: 73 FVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 114
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 153
FVAF P+ A A +L+GK ++E KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 176 FVAFATPEEATEAMSQLSGK-MIESKPLYVAIAQRKEDRRVRLQAQFSQVR 225
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 147 bits (357), Expect = 3e-36
Identities = 79/147 (53%), Positives = 107/147 (72%), Gaps = 2/147 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER-LTRYQ 177
FV FE +AA A ++NG +V+ K L+VGRAQ+K R ++LK KFE K R + +
Sbjct: 163 FVNFEKAEAAVTAIEKMNGV-VVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRK 221
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 354
G+NLYVKNLDD++D+ +L + F+ FGTITS KVM+ +G SKG GFV FS+ EEA+KA+
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAML 281
Query: 355 EMNGRIVGTKPLYVALAQRKEDRKAHL 435
+MNG++VG KP+YV+LAQ KE K HL
Sbjct: 282 KMNGKMVGNKPIYVSLAQCKEQHKLHL 308
Score = 76.6 bits (180), Expect = 1e-14
Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 360
N+YVKNL +T D L++ F FG ITSA VM + +G+S+ FGFV F E A A+ +M
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 361 NGRIVGTKPLYVALAQRKEDRKAHL 435
NG +V K L+V AQRK +R L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDL 204
Score = 53.6 bits (123), Expect = 8e-08
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 360
N++VKNLD++ID+++L F+ FG + S KV + G SKG+GFV F S A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 361 NGRIVGTKPLYV 396
NG ++ + ++V
Sbjct: 92 NGTLIRNQHIHV 103
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 141
FV F + A +A +++NGK +V KP+YV AQ K + + L+ +F
Sbjct: 267 FVEFSTSEEASKAMLKMNGK-MVGNKPIYVSLAQCKEQHKLHLQTQF 312
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 145 bits (351), Expect = 2e-35
Identities = 74/146 (50%), Positives = 103/146 (70%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F++P+ A RA +NG + K LYVGRAQKKAER++ L+ +F++ E+ +
Sbjct: 245 FVNFDNPEDARRAAETVNGTKF-GSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKV 303
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTE 357
N+YVKN++ + +E LRK F+ GTITS K+M ++ G+SKGFGFVCFS+PEEA AV
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 358 MNGRIVGTKPLYVALAQRKEDRKAHL 435
+G++ KPLYVA+AQ+KEDRK L
Sbjct: 364 FHGQMFHGKPLYVAIAQKKEDRKMQL 389
Score = 90.2 bits (214), Expect = 7e-19
Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV FE DAA A LN +V K +YVG+ KK +R K E+ T
Sbjct: 156 FVQFEQEDAAHAAIQTLNST-IVADKEIYVGKFMKKTDRVKP---------EEKYT---- 201
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTE 357
NLY+KNLD + ++ LR++FA FG I S + ++ R +G+ FV F +PE+A +A
Sbjct: 202 -NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 358 MNGRIVGTKPLYVALAQRKEDRK 426
+NG G+K LYV AQ+K +R+
Sbjct: 261 VNGTKFGSKCLYVGRAQKKAERE 283
Score = 69.3 bits (162), Expect = 1e-12
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +1
Query: 169 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEAT 342
R GV N++VKNL +++ + L+ F FG I S KV LEDG+S+G+GFV F + A
Sbjct: 107 RRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAH 166
Query: 343 KAVTEMNGRIVGTKPLYVALAQRKEDR 423
A+ +N IV K +YV +K DR
Sbjct: 167 AAIQTLNSTIVADKEIYVGKFMKKTDR 193
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 357
+LYV +L ++ + L FA F ++TS ++ + GRS +G+ F S ++A A+ +
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 358 MNGRIVGTKPLYVALAQRKEDRK 426
N ++ K + V + R D +
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDAR 107
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 141
FV F P+ A A +G ++ GKPLYV AQKK +R+ +L+ +F
Sbjct: 348 FVCFSTPEEAIDAVKTFHG-QMFHGKPLYVAIAQKKEDRKMQLQVQF 393
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 120 bits (288), Expect = 8e-28
Identities = 69/143 (48%), Positives = 99/143 (69%), Gaps = 2/143 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERLTRYQ 177
FV F +P+ A++A L G +L K L+VG+A KK ER++ LK+KF + ++ R+
Sbjct: 246 FVNFCNPENAKKAMESLCGLQL-GSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWS 304
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVT 354
NLYVKNL +++++ RLR+ F +G I SAKVM E+GRSKGFGFVCFS+ EE+ +A
Sbjct: 305 --NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKR 362
Query: 355 EMNGRIVGTKPLYVALAQRKEDR 423
+NG +V KP+ V +A+RKEDR
Sbjct: 363 YLNGFLVDGKPIVVRVAERKEDR 385
Score = 83.8 bits (198), Expect = 6e-17
Identities = 53/143 (37%), Positives = 78/143 (54%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
++ F+ P +A A LN +L +GK + + +Q+ L R TR
Sbjct: 66 YINFDSPFSASNAMTRLNHSDL-KGKAMRIMWSQR-------------DLAYRRRTRTGF 111
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 360
NLYVKNLD +I L + F PFG+I S KV+ E+G+SKGFGFV F + + A A + +
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 361 NGRIVGTKPLYVALAQRKEDRKA 429
+G +V K L+VA K++R A
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAA 194
Score = 81.8 bits (193), Expect = 3e-16
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F+ +A A L+G +V GK L+V + K ER +
Sbjct: 155 FVQFDTEQSAVSARSALHGS-MVYGKKLFVAKFINKDER------------AAMAGNQDS 201
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTE 357
N+YVKNL +T+ D+ L F+ +GT++S VM + GRS+GFGFV F +PE A KA+
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 358 MNGRIVGTKPLYVALAQRKEDRKAHL 435
+ G +G+K L+V A +K++R+ L
Sbjct: 262 LCGLQLGSKKLFVGKALKKDERREML 287
Score = 35.1 bits (77), Expect = 0.029
Identities = 19/48 (39%), Positives = 32/48 (66%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 144
FV F + + +++A LNG LV+GKP+ V A++K +R K L++ F+
Sbjct: 348 FVCFSNCEESKQAKRYLNGF-LVDGKPIVVRVAERKEDRIKRLQQYFQ 394
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 1e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +1
Query: 169 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 342
RY L+V L DD L++ F FG +T A V+ E GRS+GFGFV FS + A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 343 KAVTEMNGRIVGTKPLYVALAQRK 414
A+ EM+G+ + + + V LA +
Sbjct: 91 NAIKEMDGKELNGRQIRVNLATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 1e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +1
Query: 169 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 342
RY L+V L DD L++ F FG +T A V+ E GRS+GFGFV FS + A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 343 KAVTEMNGRIVGTKPLYVALAQRK 414
A+ EM+G+ + + + V LA +
Sbjct: 91 NAIKEMDGKELNGRQIRVNLATER 114
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 62.5 bits (145), Expect = 2e-10
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV D AE A + N +L G+ L V +A + R + R +E
Sbjct: 195 FVTMSSVDEAETAVEKFNRYDL-NGRLLTVNKAAPRGSRPERAPRVYEP----------A 243
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT 354
+YV NL +D+ RL + F+ G + A+V+ E GRS+GFGFV S +E +A++
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 355 EMNGRIVGTKPLYVALAQRKEDRKAH 432
++G+ + + + V +A+ + R+ +
Sbjct: 304 ALDGQNLEGRAIRVNVAEERPPRRGY 329
Score = 41.1 bits (92), Expect = 4e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
L+V NL ++ + L F GT+ A+V+ E +S+GFGFV SS +EA AV +
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 361 N 363
N
Sbjct: 212 N 212
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 62.1 bits (144), Expect = 2e-10
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
L+V L D+ LR+ F+PFG I A+++ E R KGFGF+ F S ++A KA+ +
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 361 NGRIVGTKPLYVALAQRKEDRKA 429
+G+IV + ++V +A+ E+ +A
Sbjct: 69 DGKIVDGRLIFVEVAKNAEEVRA 91
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 60.9 bits (141), Expect = 5e-10
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 360
L+ +L + ++D+ L K FA F T AKV+ + G++KG+GFV F +P + A+ EM
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 361 NGRIVGTKPLYVALAQRKE 417
NG+ VG +P+ + + KE
Sbjct: 199 NGKYVGNRPIKLRKSSWKE 217
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 60.1 bits (139), Expect = 9e-10
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
L+V L +E+L+ FA FG + A+V+ + GRSKGFGFV +++ E+A KA EM
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 361 NGRIVGTKPLYVALAQRKEDRK 426
N + + ++V A+ +E R+
Sbjct: 96 NAKFLDGWVIFVDPARPREPRR 117
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 60.1 bits (139), Expect = 9e-10
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKA 348
G NL++ NLD +D++ L F+ FG I S ++ D G S+GFGF+ + S E + A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 349 VTEMNGRIVGTKPLYVALAQRKEDR 423
+ M G+ + + + V+ A +K+ +
Sbjct: 171 IESMTGQYLSNRQITVSYAYKKDTK 195
Score = 33.1 bits (72), Expect = 0.12
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +1
Query: 169 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEAT 342
R Q +YV LD + +E L + F G + + V + + +GF+ + S E+A
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80
Query: 343 KAVTEMNGRIVGTKPLYVALAQRKEDRKA 429
A+ +N + KP+ V A +D+K+
Sbjct: 81 YAIKVLNMIKLHGKPIRVNKA--SQDKKS 107
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV + AE+A + N E V G+ L V RA + R + R ++
Sbjct: 158 FVTMSTVEEAEKAVEKFNSFE-VNGRRLTVNRAAPRGSRPERQPRVYDA----------A 206
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT 354
+YV NL +D RL + F+ G + A+V+ E GRS+GFGFV S+ E A+
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query: 355 EMNGRIVGTKPLYVALAQRKEDR 423
++G+ + + + V +A+ + R
Sbjct: 267 ALDGQNLEGRAIKVNVAEERTRR 289
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
L+V NL +D + L F GT+ ++V+ + +S+GFGFV S+ EEA KAV +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 361 NGRIVGTKPLYVALAQRKEDR 423
N V + L V A + R
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSR 195
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 59.3 bits (137), Expect = 2e-09
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 11/155 (7%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY-- 174
FV E A + NG EL +G+PL V +R+ R + Y
Sbjct: 136 FVTMSSVSEVEAAAQQFNGYEL-DGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGG 194
Query: 175 -------QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 327
G +YV NL +DD L F+ G + A+V+ + GRSKGFGFV + S
Sbjct: 195 GGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDS 254
Query: 328 PEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 432
+E A+ ++G + + + V+ A+ + R+ +
Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
Score = 46.8 bits (106), Expect = 9e-06
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 354
+ L+V NL +D +L + F G + +V+ + GRS+GFGFV SS E A
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150
Query: 355 EMNGRIVGTKPLYV 396
+ NG + +PL V
Sbjct: 151 QFNGYELDGRPLRV 164
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 58.8 bits (136), Expect = 2e-09
Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV + D +A A + LNG+ L G+P+ V A +R+ + F
Sbjct: 100 FVHYFDRRSAALAILSLNGRHLF-GQPIKVNWAYATGQRE-DTSSHF------------- 144
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 354
N++V +L + D L + F+ F + + A+VM + GRS+GFGFV F + ++A A+
Sbjct: 145 -NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203
Query: 355 EMNGRIVGTKPL 390
EMNG+ + ++ +
Sbjct: 204 EMNGKWLSSRQI 215
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 363
++YV N+ + + L++ F G + S+K++ +D S +GFV + A A+ +N
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS--YGFVHYFDRRSAALAILSLN 117
Query: 364 GRIVGTKPLYVALAQ---RKEDRKAH 432
GR + +P+ V A ++ED +H
Sbjct: 118 GRHLFGQPIKVNWAYATGQREDTSSH 143
Score = 30.7 bits (66), Expect = 0.62
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 351
Q +YV NL + L + F G +V ++ R KGFGFV +++ EA A+
Sbjct: 263 QFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQ--RDKGFGFVRYNTHPEAALAI 319
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 58.4 bits (135), Expect = 3e-09
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKA 348
+G NL++ N+ D+ L F FG + SAKV ++ G SK FGFV + S A A
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNA 406
Query: 349 VTEMNGRIVGTKPLYVAL 402
+ MNGR +G K L V L
Sbjct: 407 IDMMNGRHLGGKKLKVQL 424
Score = 35.9 bits (79), Expect = 0.017
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 363
L+V L + + ++ F+ +GTI +++ SKG F+ + + E+A A+ +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 364 G--RIVG-TKPLYVALAQRKEDR 423
G ++ G T PL V A + +R
Sbjct: 168 GKHKMEGSTVPLVVKWADTERER 190
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 58.0 bits (134), Expect = 4e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +1
Query: 169 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 342
R L++ L DD LR FA FG + AKV++ E GRS+GFGFV F+ AT
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 343 KAVTEMNGR 369
A++EM+G+
Sbjct: 91 AAISEMDGK 99
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 58.0 bits (134), Expect = 4e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +1
Query: 169 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 342
R L++ L DD LR FA FG + AKV++ E GRS+GFGFV F+ AT
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 343 KAVTEMNGR 369
A++EM+G+
Sbjct: 91 AAISEMDGK 99
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 58.0 bits (134), Expect = 4e-09
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV + D A A + LNG+ + G+P+ V A +R+ + F
Sbjct: 104 FVHYFDRRCASMAIMTLNGRHIF-GQPMKVNWAYATGQRE-DTSSHF------------- 148
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 354
N++V +L + D L F+ F + + A+VM + GRS+GFGFV F + ++A A+
Sbjct: 149 -NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207
Query: 355 EMNGRIVGTKPL 390
EMNG+ V ++ +
Sbjct: 208 EMNGKWVSSRQI 219
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 363
++Y N+ + + L++ FA G I S K++ +D S +GFV + A+ A+ +N
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLN 121
Query: 364 GRIVGTKPLYVALAQ---RKEDRKAH 432
GR + +P+ V A ++ED +H
Sbjct: 122 GRHIFGQPMKVNWAYATGQREDTSSH 147
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 354
Q +YV NL + L + F G +V ++ R KGFGFV +++ +EA A+
Sbjct: 267 QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ--RDKGFGFVRYNTHDEAALAIQ 324
Query: 355 EMNGR 369
N +
Sbjct: 325 MGNAQ 329
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 57.6 bits (133), Expect = 5e-09
Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 357
+L+VK D++ + RL+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV
Sbjct: 59 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 118
Query: 358 MNGRI 372
MNG++
Sbjct: 119 MNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 57.6 bits (133), Expect = 5e-09
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 357
+L+VK D++ + RL+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV
Sbjct: 78 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 137
Query: 358 MNGRIVGTKPLYVALAQ 408
MNG+ + + V Q
Sbjct: 138 MNGKFFDGRFILVKFGQ 154
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 57.6 bits (133), Expect = 5e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 351
G LYV NL +DD L F G + A+V+ + GRSKGFGFV SS +E KA+
Sbjct: 248 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 307
Query: 352 TEMNGRIVGTKPLYVALAQRKEDR 423
+NG + + + V+ A+ + R
Sbjct: 308 NSLNGADLDGRQIRVSEAEARPPR 331
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 157 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 330
ER + + L+V NL +D +L + F G + +V+ + GRS+GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150
Query: 331 EEATKAVTEMNGRIVGTKPLYV 396
E A + NG +PL V
Sbjct: 151 AEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 57.6 bits (133), Expect = 5e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 351
G LYV NL +DD L F G + A+V+ + GRSKGFGFV SS +E KA+
Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315
Query: 352 TEMNGRIVGTKPLYVALAQRKEDR 423
+NG + + + V+ A+ + R
Sbjct: 316 NSLNGADLDGRQIRVSEAEARPPR 339
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 157 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 330
ER + + L+V NL +D +L + F G + +V+ + GRS+GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150
Query: 331 EEATKAVTEMNGRIVGTKPLYV 396
E A + NG +PL V
Sbjct: 151 AEVEAAAQQFNGYEFEGRPLRV 172
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 56.8 bits (131), Expect = 8e-09
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 348
+G ++V L + D L + F+ FG I ++MLE GRS+GFGF+ F+ ++
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 349 VTEMNGRIVGTKPLYVALAQRKEDR 423
+ EM+GR G + + V A+ K R
Sbjct: 65 IREMHGRDFGDRVISVNRAEPKLGR 89
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 56.8 bits (131), Expect = 8e-09
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 351
G NL++ N+ +D+ L F PFG + SAKV ++ G SK FGF+ + S A A+
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 397
Query: 352 TEMNGRIVGTKPLYVAL 402
MNG + K L V L
Sbjct: 398 NTMNGCQLSGKKLKVQL 414
Score = 37.9 bits (84), Expect = 0.004
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 363
L+V L + + ++ F+ +GTI +++ + SKG F+ + S E+A A+ +N
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 170
Query: 364 GRIV---GTKPLYVALAQRKEDRKA 429
GR + PL V A +++R+A
Sbjct: 171 GRHIMEGANVPLIVKWADTEKERQA 195
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGK--PLYVGRAQKKAERQ 120
F+ +E + A A LNG+ ++EG PL V A + ERQ
Sbjct: 153 FLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQ 194
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 56.8 bits (131), Expect = 8e-09
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 351
G NL++ N+ +D+ L F PFG + SAKV ++ G SK FGF+ + S A A+
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 388
Query: 352 TEMNGRIVGTKPLYVAL 402
MNG + K L V L
Sbjct: 389 NTMNGCQLSGKKLKVQL 405
Score = 38.7 bits (86), Expect = 0.002
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Frame = +1
Query: 127 LKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKG 303
L+ K+ + ERL V + KN+ +T ++ F+ +GTI +++ + SKG
Sbjct: 86 LQVKYADGELERLEHKLFVGMLPKNVSET----EVQSLFSEYGTIKDLQILRGSLQTSKG 141
Query: 304 FGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDRKA 429
F+ + S E+A A+ +NGR + PL V A +++R+A
Sbjct: 142 CLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQA 186
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGK--PLYVGRAQKKAERQ 120
F+ +E + A A LNG+ ++EG PL V A + ERQ
Sbjct: 144 FLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQ 185
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 357
++V +L + D L F +G++ AKV+L+ GRSKG+GFV F+ E +A+TE
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 358 MNGRIVGTKPLYVALAQRK 414
MNG+ T+P+ + A K
Sbjct: 216 MNGQYCSTRPMRIGPAANK 234
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 56.4 bits (130), Expect = 1e-08
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Frame = +1
Query: 109 AERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE- 285
A R L + E R NL+V L E LR FA FG + AKV+ +
Sbjct: 32 ASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91
Query: 286 -DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 432
G SKGFGFV +++ E++ K + M+G+ + ++ A+ +E +++
Sbjct: 92 VSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSY 141
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 56.4 bits (130), Expect = 1e-08
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +1
Query: 169 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEAT 342
RY LY+ L D+ L+ F+ F +T A+VM GRS+G+GFV F S + A
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86
Query: 343 KAVTEMNGR 369
A++ MNG+
Sbjct: 87 SAISAMNGQ 95
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 357
+LY+ NLD + +E L F+ FG + + V+ +D G S+GF F+ F S + A +A+
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRS-VLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 358 MNGRIVGTKPLYVALAQRKED 420
M+GR++G K L V + ED
Sbjct: 77 MDGRLIGQKILCVQRTPKVED 97
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 56.4 bits (130), Expect = 1e-08
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 4/146 (2%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F D + +A E+NG + + + +G A + + +++ + S TR +G
Sbjct: 245 FVRFGDENERTKAMTEMNGVKC-SSRAMRIGPATPR--KTNGYQQQGGYMPSGAFTRSEG 301
Query: 181 ----VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKA 348
++V LD ++ DE L++ F+ FG I S K+ + KG GFV F + A +A
Sbjct: 302 DTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV----GKGCGFVQFVNRPNAEEA 357
Query: 349 VTEMNGRIVGTKPLYVALAQRKEDRK 426
+ ++NG ++G + + ++ + +++
Sbjct: 358 LEKLNGTVIGKQTVRLSWGRNPANKQ 383
Score = 53.2 bits (122), Expect = 1e-07
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV FE D A++ E NG + + + +K L+ L
Sbjct: 150 FVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDL---------- 199
Query: 181 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 351
+++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 200 -SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
Query: 352 TEMNG 366
TEMNG
Sbjct: 259 TEMNG 263
Score = 34.7 bits (76), Expect = 0.038
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEF--APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 354
++V +L + +D+ L F A I S KV+ +G S+G+GFV F S + A K +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 355 EMNG 366
E NG
Sbjct: 165 EFNG 168
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 55.2 bits (127), Expect = 3e-08
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
+YV NL T D+ LR+ F+ +G + A VM + RS+GFGFV +SS EA AV+ M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 361 NGRIVGTKPLYVAL 402
+G+ + + + V L
Sbjct: 65 DGKELNGRRVSVKL 78
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 55.2 bits (127), Expect = 3e-08
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 4/146 (2%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F D + +A E+NG + + + +G A + + +++ + + LTR +G
Sbjct: 243 FVRFGDENERTKAMTEMNGVKC-SSRAMRIGPATPR--KTNGYQQQGGYMPNGTLTRPEG 299
Query: 181 ----VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKA 348
++V LD ++ DE L++ F FG I S K+ + KG GFV F + A +A
Sbjct: 300 DIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV----GKGCGFVQFVNRPNAEEA 355
Query: 349 VTEMNGRIVGTKPLYVALAQRKEDRK 426
+ ++NG ++G + + ++ + +++
Sbjct: 356 LEKLNGTVIGKQTVRLSWGRNPANKQ 381
Score = 54.4 bits (125), Expect = 4e-08
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV FE D A++ E NG + + + +K L+ L
Sbjct: 148 FVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDL---------- 197
Query: 181 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 351
+++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 198 -SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 352 TEMNG 366
TEMNG
Sbjct: 257 TEMNG 261
Score = 34.3 bits (75), Expect = 0.050
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGT--ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 354
++V +L +D+ L FA I S KV+ +G S+G+GFV F S + A K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 355 EMNG 366
E NG
Sbjct: 163 EFNG 166
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 54.8 bits (126), Expect = 3e-08
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +1
Query: 166 TRYQGV--NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPE 333
T+ +GV L++ L ++ L + F+ G + A+++++ RSKGFGFV F+S +
Sbjct: 27 TQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASAD 86
Query: 334 EATKAVTEMNGRIVGTKPLYVALAQRKE 417
EA KA+ E NG+ + + ++V A+ K+
Sbjct: 87 EAQKALMEFNGQQLNGRTIFVDYAKAKQ 114
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 54.4 bits (125), Expect = 4e-08
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
L++ + ++D++ LR+ F +G + +V+L E GRS+GFGFV F+S E A+ A+ +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 361 NGR 369
+GR
Sbjct: 102 DGR 104
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 54.4 bits (125), Expect = 4e-08
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV FE D A++ E NG + + + +K L+ L
Sbjct: 148 FVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDL---------- 197
Query: 181 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 351
+++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 198 -SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 352 TEMNG 366
TEMNG
Sbjct: 257 TEMNG 261
Score = 34.3 bits (75), Expect = 0.050
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGT--ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 354
++V +L +D+ L FA I S KV+ +G S+G+GFV F S + A K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 355 EMNG 366
E NG
Sbjct: 163 EFNG 166
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 54.0 bits (124), Expect = 6e-08
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +1
Query: 85 YVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTIT 264
Y+GRA K K K E L E T ++ L+V NL T+ E L F G +
Sbjct: 151 YLGRALKVNFADKPKPNK-EPLYPE--TEHK---LFVGNLSWTVTSESLAGAFRECGDVV 204
Query: 265 SAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 417
A+V+ + GRS+G+GFVC+SS E A+ ++G + + + V LAQ K+
Sbjct: 205 GARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
Score = 32.3 bits (70), Expect = 0.20
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
LY NL +D L + F +V+ + G+S+GF FV S+ E+ + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 361 NGRIVGTKPLYVALAQRKEDRKAHL 435
+G + L V A + + K L
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPL 171
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 53.6 bits (123), Expect = 8e-08
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +1
Query: 181 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 351
++++V +L + D L + F+ + ++ SAKV+++ GRSKG+GFV F E ++A+
Sbjct: 202 LSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRAL 261
Query: 352 TEMNGRIVGTKPLYVALAQRK 414
TEMNG + + V +A K
Sbjct: 262 TEMNGAYCSNRQMRVGIATPK 282
Score = 46.8 bits (106), Expect = 9e-06
Identities = 22/64 (34%), Positives = 37/64 (57%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
++V +D + DE LR+ F+ FG + S K+ + KG GFV F+ + A A+ +NG
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV----GKGCGFVQFADRKSAEDAIESLNG 378
Query: 367 RIVG 378
++G
Sbjct: 379 TVIG 382
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 53.6 bits (123), Expect = 8e-08
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV + D +A A + LNG+ L G+P+ V A +R+ + F
Sbjct: 95 FVHYFDRRSAGLAILSLNGRHLF-GQPIKVNWAYASGQRE-DTSSHF------------- 139
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 354
N++V +L + D L F+ + T + A+VM + GRS+GFGFV F + ++A A+
Sbjct: 140 -NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198
Query: 355 EMNGRIVGTKPL 390
E+ G+ +G++ +
Sbjct: 199 EITGKWLGSRQI 210
Score = 37.5 bits (83), Expect = 0.005
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 363
++YV N+ + + L++ FA G + S K++ ++ S +GFV + A A+ +N
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS--YGFVHYFDRRSAGLAILSLN 112
Query: 364 GRIVGTKPLYVALAQ---RKEDRKAH 432
GR + +P+ V A ++ED +H
Sbjct: 113 GRHLFGQPIKVNWAYASGQREDTSSH 138
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 351
Q +YV NL + L + F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 258 QYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHVEAALAI 314
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/93 (26%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Frame = +1
Query: 136 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFG 309
+F ++K+ + V+NL + ++ L++EF+ FG I K++ ++ RSKG+
Sbjct: 25 RFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYA 84
Query: 310 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 408
F+ F+S ++A A+ M+ R+ + +Y+ +A+
Sbjct: 85 FIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAK 117
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 52.8 bits (121), Expect = 1e-07
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
F + + A +LNG VEG+ + V +K +L L+SE
Sbjct: 121 FATMKSVEDANAVVEKLNGNT-VEGREIKVNITEKPIASSPDLS----VLQSEDSAFVDS 175
Query: 181 -VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAV 351
+YV NL T+ E L F+ G + SAKV G SK GFGFV FSS E+ A+
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 352 TEMNGRIV 375
+N ++
Sbjct: 236 VALNNSLL 243
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
+Y+ N+ T+ +E+L K G + +VM + GRS+ FGF S E+A V ++
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 361 NGRIVGTKPLYVALAQR 411
NG V + + V + ++
Sbjct: 138 NGNTVEGREIKVNITEK 154
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 52.8 bits (121), Expect = 1e-07
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV + D A A + LNG+ + G+P+ V A +R+ + F
Sbjct: 104 FVHYFDRRCASMAIMTLNGRHIF-GQPMKVNWAYATGQRE-DTSSHF------------- 148
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITS----AKVMLED--GRSKGFGFVCFSSPEEAT 342
N++V +L + D L F+ F + +S A+VM + GRS+GFGFV F + ++A
Sbjct: 149 -NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQ 207
Query: 343 KAVTEMNGRIVGTKPL 390
A+ EMNG+ V ++ +
Sbjct: 208 TAINEMNGKWVSSRQI 223
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 363
++Y N+ + + L++ FA G I S K++ +D S +GFV + A+ A+ +N
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLN 121
Query: 364 GRIVGTKPLYVALAQ---RKEDRKAH 432
GR + +P+ V A ++ED +H
Sbjct: 122 GRHIFGQPMKVNWAYATGQREDTSSH 147
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 354
Q +YV NL + L + F G +V ++ R KGFGFV +++ +EA A+
Sbjct: 271 QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ--RDKGFGFVRYNTHDEAALAIQ 328
Query: 355 EMNGR 369
N +
Sbjct: 329 MGNAQ 333
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 52.8 bits (121), Expect = 1e-07
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +1
Query: 181 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 351
++++V +L + D L + FA + ++ AKV+++ GRSKG+GFV F E ++A+
Sbjct: 213 LSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAM 272
Query: 352 TEMNGRIVGTKPLYVALAQRK 414
TEMNG ++ + V +A K
Sbjct: 273 TEMNGAFCSSRQMRVGIATPK 293
Score = 45.6 bits (103), Expect = 2e-05
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK-------SE 159
FV F D + RA E+NG + + VG A K + + L +
Sbjct: 259 FVRFGDENERSRAMTEMNGA-FCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNG 317
Query: 160 RLTRYQGVN--LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPE 333
++ + N ++V LD + +E L + F+ FG + S K+ + KG GFV F++ +
Sbjct: 318 SMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV----GKGCGFVQFANRQ 373
Query: 334 EATKAVTEMNGRIVG 378
A +A+ +NG ++G
Sbjct: 374 SAEEAIGNLNGTVIG 388
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEF-APFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 354
+++V +L + D L++ F + ++ AKV+ + GRSKG+GFV F+ E +A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 355 EMNGRIVGTKPLYVALAQRKED 420
EMNG T+P+ ++ A K++
Sbjct: 177 EMNGLYCSTRPMRISAATPKKN 198
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +1
Query: 193 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 372
V NLD + +E L+K F+ G + K+ +KG+G+V F + A +AV M G++
Sbjct: 241 VANLDQNVTEEELKKAFSQLGEVIYVKIPA----TKGYGYVQFKTRPSAEEAVQRMQGQV 296
Query: 373 VGTKPLYVA 399
+G + + ++
Sbjct: 297 IGQQAVRIS 305
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 52.0 bits (119), Expect = 2e-07
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 357
++V +L + D L + F A + ++ AKV+ + GRSKG+GFV F+ E +A+TE
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 358 MNGRIVGTKPLYVALAQRKE 417
MNG+ ++P+ A K+
Sbjct: 235 MNGQYCSSRPMRTGPAANKK 254
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 51.6 bits (118), Expect = 3e-07
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
F+ F DP +ER ++ K +++G+ + +A + ++Q LKR + G
Sbjct: 51 FIVFADPCVSERVIMD---KHIIDGRTVEAKKAVPRDDQQV-LKRHASPIHLMSPVHGGG 106
Query: 181 ---VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT- 342
++V L +I +E + F FGTI VM + R +GFGF+ F S +
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 343 ---KAVTEMNGRIVGTK 384
K E+NG++V K
Sbjct: 167 VLHKTFHELNGKLVEVK 183
Score = 43.6 bits (98), Expect = 8e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 357
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 358 --MNGRIVGTK 384
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 51.6 bits (118), Expect = 3e-07
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
F+ F DP +ER ++ K +++G+ + +A + ++Q LKR + G
Sbjct: 51 FIVFADPCVSERVIMD---KHIIDGRTVEAKKAVPRDDQQV-LKRHASPIHLMSPVHGGG 106
Query: 181 ---VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT- 342
++V L +I +E + F FGTI VM + R +GFGF+ F S +
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 343 ---KAVTEMNGRIVGTK 384
K E+NG++V K
Sbjct: 167 VLHKTFHELNGKLVEVK 183
Score = 43.6 bits (98), Expect = 8e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 357
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 358 --MNGRIVGTK 384
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 51.6 bits (118), Expect = 3e-07
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
F+ F DP +ER ++ K +++G+ + +A + ++Q LKR + G
Sbjct: 51 FIVFADPCVSERVIMD---KHIIDGRTVEAKKAVPRDDQQV-LKRHASPIHLMSPVHGGG 106
Query: 181 ---VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT- 342
++V L +I +E + F FGTI VM + R +GFGF+ F S +
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 343 ---KAVTEMNGRIVGTK 384
K E+NG++V K
Sbjct: 167 VLHKTFHELNGKLVEVK 183
Score = 43.6 bits (98), Expect = 8e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 357
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 358 --MNGRIVGTK 384
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 51.6 bits (118), Expect = 3e-07
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 6/145 (4%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F DP +R L K ++ + + V RA + E+Q + + L + R +
Sbjct: 51 FVIFSDPSVLDRV---LQEKHSIDTREVDVKRAMSREEQQ--VSGRTGNLNTSRSSGGDA 105
Query: 181 VN----LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT 342
N ++V L T+ DE R+ F +G +T +M + R +GFGFV F S E+A
Sbjct: 106 YNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAV 164
Query: 343 KAVTEMNGRIVGTKPLYVALAQRKE 417
+V + K + V A K+
Sbjct: 165 DSVLHKTFHDLSGKQVEVKRALPKD 189
Score = 46.8 bits (106), Expect = 9e-06
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 360
L+V + D+++LR+ F +G ++ A VM + GR +GFGFV FS P + + E
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 361 NGRIVGTKPLYVALAQRKEDRK 426
+ + T+ + V A +E+++
Sbjct: 68 HS--IDTREVDVKRAMSREEQQ 87
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 51.6 bits (118), Expect = 3e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 357
++V +L + D L + F A + ++ AKV+++ GR+KG+GFV FS E +A+TE
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 358 MNGRIVGTKPLYVALAQRKE 417
MNG T+P+ + A K+
Sbjct: 217 MNGVPCSTRPMRIGPAASKK 236
Score = 41.9 bits (94), Expect = 3e-04
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F D RA E+NG +P+ +G A K + +R Q + +T
Sbjct: 201 FVRFSDESEQIRAMTEMNGVP-CSTRPMRIGPAASK--KGVTGQRDSYQSSAAGVTTDND 257
Query: 181 VN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 351
N ++V LD ++ D+ L+ F+ +G I K+ K GFV FS A +A+
Sbjct: 258 PNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI----PAGKRCGFVQFSEKSCAEEAL 313
Query: 352 TEMNGRIVG 378
+NG +G
Sbjct: 314 RMLNGVQLG 322
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 51.6 bits (118), Expect = 3e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 357
++V +L + D L + F A + ++ AKV+++ GR+KG+GFV FS E +A+TE
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 358 MNGRIVGTKPLYVALAQRKE 417
MNG T+P+ + A K+
Sbjct: 217 MNGVPCSTRPMRIGPAASKK 236
Score = 35.5 bits (78), Expect = 0.022
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F D RA E+NG +P+ +G A K + +R Q + +T
Sbjct: 201 FVRFSDESEQIRAMTEMNGVP-CSTRPMRIGPAASK--KGVTGQRDSYQSSAAGVTTDND 257
Query: 181 VN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 324
N ++V LD ++ D+ L+ F+ +G I K+ K GFV FS
Sbjct: 258 PNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI----PAGKRCGFVQFS 304
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 51.2 bits (117), Expect = 4e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +1
Query: 190 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 363
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 364 GRIVGTKPLYVALAQRK 414
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 108
FV F+D A A E+NGKEL +G+ + V AQ +
Sbjct: 51 FVTFKDEKAMRDAIEEMNGKEL-DGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 51.2 bits (117), Expect = 4e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +1
Query: 190 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 363
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 364 GRIVGTKPLYVALAQRK 414
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 108
FV F+D A A E+NGKEL +G+ + V AQ +
Sbjct: 51 FVTFKDEKAMRDAIEEMNGKEL-DGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 51.2 bits (117), Expect = 4e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +1
Query: 190 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 363
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 364 GRIVGTKPLYVALAQRK 414
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 108
FV F+D A A E+NGKEL +G+ + V AQ +
Sbjct: 51 FVTFKDEKAMRDAIEEMNGKEL-DGRVITVNEAQSR 85
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 50.8 bits (116), Expect = 5e-07
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F DP+ AER + K +++GK + +A + + K S + +
Sbjct: 51 FVVFADPNVAERVVLL---KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSK- 106
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT 354
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 107 -KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
Query: 355 ----EMNGRIVGTK 384
E+NG++V K
Sbjct: 166 KTFHELNGKMVEVK 179
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 348
+ L++ + ++RLR F FG + A +M + GR++GFGFV F+ P A +
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 349 VT---EMNGRIVGTK 384
V ++G+IV K
Sbjct: 64 VLLKHIIDGKIVEAK 78
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 50.8 bits (116), Expect = 5e-07
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F DP+ AER + K +++GK + +A + + K S + +
Sbjct: 51 FVVFADPNVAERVVLL---KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSK- 106
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT 354
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 107 -KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
Query: 355 ----EMNGRIVGTK 384
E+NG++V K
Sbjct: 166 KTFHELNGKMVEVK 179
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 348
+ L++ + ++RLR F FG + A +M + GR++GFGFV F+ P A +
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 349 VT---EMNGRIVGTK 384
V ++G+IV K
Sbjct: 64 VLLKHIIDGKIVEAK 78
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 50.8 bits (116), Expect = 5e-07
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEF--APFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 354
LYV NL LR+ F A F + SA+V+ D GRS G+GFV F++ EEA A+T
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 355 EMNGRIVGTKPLYVALAQR 411
++NG+ + +P+ + + R
Sbjct: 255 KLNGKEIMGRPITLKFSLR 273
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = +1
Query: 88 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 267
V + A+ + + K E+ ++ L R L+V NL ++ + + F GT+ +
Sbjct: 68 VAEKETSADEETSQEEKTEETQNSNLKR----KLFVFNLPWSMSVNDISELFGQCGTVNN 123
Query: 268 AKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 411
+++ + DG+++GF FV +S EEA A+ + + V + + V+ A+R
Sbjct: 124 VEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARR 172
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKE 126
FV+F + AE A +LNGKE++ G+P+ + + + A ++
Sbjct: 240 FVSFATREEAENAITKLNGKEIM-GRPITLKFSLRSASESED 280
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 50.8 bits (116), Expect = 5e-07
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV--- 351
++V L + D E L++ F FG I A V+L E G S+GFGFV + S E A A+
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 352 --TEMNGRIVGTKP 387
E++GRI+G P
Sbjct: 98 QNKELDGRIIGVHP 111
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 50.4 bits (115), Expect = 7e-07
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = +1
Query: 220 DERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 399
D+ LR+ FAPF + + + R KGFGF+ F S ++A KA+ +NG+IV + ++V
Sbjct: 84 DQSLRQLFAPFARLIKDQ---QTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVE 140
Query: 400 LAQRKE 417
A+ E
Sbjct: 141 TAKEVE 146
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 50.0 bits (114), Expect = 9e-07
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +1
Query: 172 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATK 345
Y NLY+ L ++D+ L F+ FG I AKV+ + G SKG+GFV ++ + A
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANT 536
Query: 346 AVTEMNGRIVGTKPLYVALA 405
AV MNG + L V +A
Sbjct: 537 AVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 50.0 bits (114), Expect = 9e-07
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +1
Query: 172 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATK 345
Y NLY+ L ++D+ L F+ FG I AKV+ + G SKG+GFV ++ + A
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANT 536
Query: 346 AVTEMNGRIVGTKPLYVALA 405
AV MNG + L V +A
Sbjct: 537 AVQAMNGYRFEGRTLAVRIA 556
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 50.0 bits (114), Expect = 9e-07
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
F+ F DP AER ++ K +++G+ + +A + ++Q LKR + ++ G
Sbjct: 60 FIVFADPSVAERVIMD---KHIIDGRTVEAKKAVPRDDQQV-LKRHASPM--HLISPSHG 113
Query: 181 VN--------LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSP 330
N ++V L +I + + F FGTI VM + R +GFGF+ F S
Sbjct: 114 GNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSE 173
Query: 331 EEAT----KAVTEMNGRIVGTK 384
E K E+NG++V K
Sbjct: 174 ESVDMVLHKTFHELNGKMVEVK 195
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 357
L++ + D+ERL++ F +G + A +M + GR++GFGF+ F+ P A + + +
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 358 --MNGRIVGTK 384
++GR V K
Sbjct: 77 HIIDGRTVEAK 87
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.6 bits (113), Expect = 1e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+ A A+ M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 361 NGRIVGTKPLYVALAQRK 414
+GR +G K + V A+ K
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.6 bits (113), Expect = 1e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+ A A+ M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 361 NGRIVGTKPLYVALAQRK 414
+GR +G K + V A+ K
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
L++ L ++D++ L+ F+ FG + ++ + GRS+GFGFV F+ +A A M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 361 NGRIVGTKPLYVALA 405
+G+ + +PL ++ A
Sbjct: 103 DGKGLLGRPLRISFA 117
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 190 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 363
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 364 G 366
G
Sbjct: 69 G 69
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/80 (33%), Positives = 41/80 (51%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
LYVKN+ + E+L++ F G +T G + FGFV ++ A KAV +
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 353
Query: 367 RIVGTKPLYVALAQRKEDRK 426
V +PL V LA+ + +RK
Sbjct: 354 YEVNGQPLEVVLAKPQAERK 373
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 351
G +++ L + +E LR G I ++M + G SKG+ FV F + + A KA+
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 352 TEMNGRIVGTKPLYVALAQRK 414
E++ + K + +L++ K
Sbjct: 175 EELHSKEFKGKTIRCSLSETK 195
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 190 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 363
++ L T D LR F +G + AKV+L+ GRS+GFGF+ F + +A+ MN
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 364 GRIVGTKPLYVALAQ 408
G + + + V AQ
Sbjct: 70 GMDLDGRTITVDKAQ 84
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 360
L+VK + + +E L + F+ +G + V+++ R KGF +V FSS EEA KA+ E+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 361 NGRIV 375
N ++V
Sbjct: 83 NAQLV 87
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 163 LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEA 339
+T G ++YV L I +E +R+ F+ +G++ + K++ + R K +GFV FS+ A
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 340 TKAVTEMNGRIVGTKPLYV 396
A+ +M+G+ +G + + V
Sbjct: 61 DDAIEDMDGKSIGGRAVRV 79
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +1
Query: 154 SERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 327
S+ +R+ ++ V NL + L + F PFG +T V ++ S+GFGFV F S
Sbjct: 165 SDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVS 224
Query: 328 PEEATKAVTEMNG 366
E+A +A+ ++NG
Sbjct: 225 REDAQRAINKLNG 237
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 48.4 bits (110), Expect = 3e-06
Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE--RLTRY 174
+V F D + A I L+G+ L+ G+P+ V K +E +K L + L Y
Sbjct: 227 YVEFYDTMSVPMA-IALSGQPLL-GQPVMV----KPSEAEKNLVQSTTAAAGAGGMLGPY 280
Query: 175 QGV--NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATK 345
G LYV NL + ++ LRK F FG++ +V E G KGFGFV F+ E+A
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Query: 346 AVTEMNGRI 372
A+ +NG++
Sbjct: 341 AL-NLNGQL 348
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
++V + + D+ LR+ F+ +G + AK+++ E GRS+GF FV F+S EEA+ A+ ++
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QL 94
Query: 361 NGR 369
+G+
Sbjct: 95 DGQ 97
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 360
LYV L ++ LR F FG + ++++ R KGF F+ + + EEA KA+ M
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 361 NGRIVGTKPLYVALAQRKED 420
+G+ + + ++V A+ + D
Sbjct: 139 HGKFLDGRVIFVEEAKTRSD 158
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.6 bits (108), Expect = 5e-06
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
+Y NL + + L+ F + AKV+ E GRS+GFGF+ F S E A+ M
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 361 NGRIVGTKPLYVALAQRKE 417
NG V + L + LA +E
Sbjct: 281 NGVEVEGRALRLNLASERE 299
Score = 47.2 bits (107), Expect = 7e-06
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +1
Query: 88 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 267
V ++ E E + + E+ K + LYV NL TI L + F GT+
Sbjct: 85 VEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144
Query: 268 AKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 396
+++ + RS+GFGFV S EEA +A+ N +G + + V
Sbjct: 145 VQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 47.6 bits (108), Expect = 5e-06
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
L++ L ++ LR F FG + K++++ RSKG+ F+ +++ E A A+ EM
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 361 NGRIVGTKPLYVALAQRKEDRK 426
NG+I+ + V +A+ K R+
Sbjct: 344 NGKIINGWMIVVDVAKTKPFRQ 365
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 47.2 bits (107), Expect = 7e-06
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 193 VKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 366
V NL + + L + F PFG +T V ++ G S+GFGFV F S E+A +A+ ++NG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 47.2 bits (107), Expect = 7e-06
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE 357
L++ + ++ERL++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 358 ---MNGRIVGTK 384
++GR+V K
Sbjct: 67 KHNIDGRLVEAK 78
Score = 46.4 bits (105), Expect = 1e-05
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F DP AE I + K ++G+ + +A + ++ + ++ +
Sbjct: 51 FVVFADPAVAE---IVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT 107
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT 354
++V L ++ + + F FGT T VM + R +GFGF+ + S E K +
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL 167
Query: 355 ----EMNGRIVGTK 384
E+NG++V K
Sbjct: 168 KTFHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 47.2 bits (107), Expect = 7e-06
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE 357
L++ + ++ERL++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 358 ---MNGRIVGTK 384
++GR+V K
Sbjct: 67 KHNIDGRLVEAK 78
Score = 46.4 bits (105), Expect = 1e-05
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV F DP AE I + K ++G+ + +A + ++ + ++ +
Sbjct: 51 FVVFADPAVAE---IVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT 107
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT 354
++V L ++ + + F FGT T VM + R +GFGF+ + S E K +
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL 167
Query: 355 ----EMNGRIVGTK 384
E+NG++V K
Sbjct: 168 KTFHELNGKMVEVK 181
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 46.8 bits (106), Expect = 9e-06
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 190 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 363
+V L DD L FA +G + +K++ E GRS+GFGFV F + A+ MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 364 GRIVGTKPLYVALAQRK 414
G+ + + + V AQ +
Sbjct: 71 GQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 46.8 bits (106), Expect = 9e-06
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 190 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 363
+V L DD L FA +G + +K++ E GRS+GFGFV F + A+ MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 364 GRIVGTKPLYVALAQRK 414
G+ + + + V AQ +
Sbjct: 71 GQDLDGRSITVNEAQSR 87
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +1
Query: 151 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 324
K+E + + + LYV N+ + D +L F PFGT+ S +V + G S+G G+V
Sbjct: 98 KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMG 157
Query: 325 SPEEATKAVTEMNGRIVGTKPLYV 396
S A A+ ++G VG + + V
Sbjct: 158 SINSAKIAIASLDGTEVGGREMRV 181
Score = 44.4 bits (100), Expect = 5e-05
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS--ERLTRY 174
+V ++A+ A L+G E V G+ + R + + +R E L S +++ Y
Sbjct: 153 YVTMGSINSAKIAIASLDGTE-VGGREM---RVRYSVDMNPGTRRNPEVLNSTPKKILMY 208
Query: 175 QGVN-LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATK 345
+ + +YV NL + LR F+ FGTI S +V+ + GR++ F F+ F+S EE
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 346 AVTEMNG 366
A++ NG
Sbjct: 269 ALS-FNG 274
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEA 339
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 177 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADG 236
Query: 340 TKAVTEMNGRIV 375
A EM G IV
Sbjct: 237 QAAKDEMQGIIV 248
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
LYV NLD ++ + + F+ FG + V+ + +S+G FV + S E+A KA M
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 361 NGRIVGTKPLYVALA 405
+ +I+ + L V++A
Sbjct: 119 DAKILNGRKLTVSIA 133
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEM 360
LYV L D +++ L F PFG I K L+ K FGFV F E+A+ A+ M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 361 NG 366
+G
Sbjct: 75 DG 76
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 44.0 bits (99), Expect = 6e-05
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEA 339
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 185 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADG 244
Query: 340 TKAVTEMNGRIV 375
A +M G IV
Sbjct: 245 EAAKEKMQGIIV 256
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 44.0 bits (99), Expect = 6e-05
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Frame = +1
Query: 118 QKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 288
Q+ + R + L+S RLT ++ L+++ L E LR F+ +G + A V+L+
Sbjct: 51 QEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDK 110
Query: 289 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 378
G+SKG+GFV F + A A+ E + +I G
Sbjct: 111 VTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 44.0 bits (99), Expect = 6e-05
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Frame = +1
Query: 118 QKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 288
Q+ + R + L+S RLT ++ L+++ L E LR F+ +G + A V+L+
Sbjct: 51 QEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDK 110
Query: 289 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 378
G+SKG+GFV F + A A+ E + +I G
Sbjct: 111 VTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 44.0 bits (99), Expect = 6e-05
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKR-KFEQLKS-ERLTRY 174
FVAF DP +R L K ++ + + V RA + E+ + F ++ +
Sbjct: 51 FVAFSDPAVIDRV---LQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANV 107
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT-- 342
+ ++V L + + R F +G ++ A +M++ R +GFGFV F S +
Sbjct: 108 RTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLV 167
Query: 343 --KAVTEMNGRIVGTK 384
K ++NG+ V K
Sbjct: 168 LHKTFHDLNGKQVEVK 183
Score = 40.3 bits (90), Expect = 8e-04
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 330
L++ + D+ LR+ F+ FG + VM E GR +GFGFV FS P
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 44.0 bits (99), Expect = 6e-05
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 208 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 381
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
Query: 382 K 384
K
Sbjct: 86 K 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 44.0 bits (99), Expect = 6e-05
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 208 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 381
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
Query: 382 K 384
K
Sbjct: 86 K 86
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 43.6 bits (98), Expect = 8e-05
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMN 363
L+ NL I + F G + ++ +DG KG+G + F+SPEEA KA+ EMN
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL-EMN 444
Query: 364 GRIVGTKPLYVALAQRK 414
G+++ + + + LA +
Sbjct: 445 GKLLLGRDVRLDLANER 461
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 43.6 bits (98), Expect = 8e-05
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 357
+L V+NL E LRK F FG + + + G +GFGFV F P +A A
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 358 MNGRIVGTKPLYVALAQRKEDRK 426
M+G ++ + L V A+ E+RK
Sbjct: 97 MDGYLLLGRELTVVFAE--ENRK 117
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 43.6 bits (98), Expect = 8e-05
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 208 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 381
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGR 85
Query: 382 K 384
K
Sbjct: 86 K 86
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 354
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 35 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94
Query: 355 --EMNGRIVGTK 384
E+NG++V K
Sbjct: 95 FHELNGKMVEVK 106
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 357
+L V+NL E LR+ F FG + + + G +GFGF+ F P +A +A +
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 358 MNGRIVGTKPLYVALAQRKEDRK 426
M+G ++ + L V A+ E+RK
Sbjct: 98 MDGYLLLGRELTVVFAE--ENRK 118
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 42.7 bits (96), Expect = 1e-04
Identities = 31/76 (40%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 360
+YV L E L F FG I AKV+ + RSKGFGFV F E AT+A
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 361 N----GRIVGTKPLYV 396
N GR V K Y+
Sbjct: 71 NHTIDGRTVNCKLAYL 86
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 42.7 bits (96), Expect = 1e-04
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
++ F D + A I L+G +L G+P+ V K +E +K L + T
Sbjct: 213 YIEFYDVMSVPMA-IALSG-QLFLGQPVMV----KPSEAEKNLAQSNSTTVGG--TGPAD 264
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT 354
LYV NL + + +LR+ F FG + ++ L E G+ KGFGF+ F E + A
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQI 324
Query: 355 EMNGRI 372
+NG++
Sbjct: 325 ALNGKL 330
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 360
++V L + +R+ F FG I A V+ + GRSKG+GFV F E A +A M
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 361 NGRIVGTK 384
N I G +
Sbjct: 84 NPVIDGRR 91
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 42.7 bits (96), Expect = 1e-04
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Frame = +1
Query: 190 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA----- 348
+V+ LD D++ L F+ FG + +K++ + G+S+ FGFV F + T A
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 349 VTEMNGRIVGTKPLYVALA-QRKEDRKA 429
V E + V + V +A QR+++R A
Sbjct: 70 VEESRSKCVNVGSITVEVARQRRKNRSA 97
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 190 YVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 363
+V L D++ + + F FG + +K+++ E GRSKGF FV F + A+ MN
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 364 GR 369
G+
Sbjct: 107 GQ 108
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 360
++V L E LR+ F +G I A V+ + GRSKG+GFV F PE A +A +
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
Query: 361 NGRIVGTK 384
I G +
Sbjct: 86 TPIIDGRR 93
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 1 FVAFEDPDAAERACIE 48
FV F DP+AA RAC +
Sbjct: 69 FVTFRDPEAARRACAD 84
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 360
++V L E LR+ F +G I A V+ + GRSKG+GFV F PE A +A +
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDP 85
Query: 361 NGRIVGTK 384
I G +
Sbjct: 86 TPIIDGRR 93
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 1 FVAFEDPDAAERACIE 48
FV F DP+AA RAC++
Sbjct: 69 FVTFRDPEAARRACVD 84
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +1
Query: 187 LYVKNLDDT-IDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 360
+ VKNL + +ERLR F+ G I K+ + DG+S+ F ++ F + +EA A+T +
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYV 63
Query: 361 NGRIVGTKPLYVALA 405
N + T + V +A
Sbjct: 64 NKCFIDTYRISVEVA 78
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 360
L V+ LD+ D+E LR EF+ I +++ + S+GF FV F S E+ATKA+
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 361 N 363
N
Sbjct: 520 N 520
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 42.3 bits (95), Expect = 2e-04
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
F+ F DP ++ + ++ GK + + R K + K +K++++
Sbjct: 64 FITFADPSVVDKV---IEDTHVINGKQVEIKRTIPKGAGGNQSK----DIKTKKI----- 111
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT 354
+V + T+ ++ L+ FA +G + +V+ E RS+GFGFV F S E + ++
Sbjct: 112 ---FVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 355 EMN 363
+ N
Sbjct: 169 KGN 171
Score = 35.9 bits (79), Expect = 0.017
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 357
+++ L + K F +G IT + +M + G+ +GFGF+ F+ P K + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 358 --MNGRIVGTK 384
+NG+ V K
Sbjct: 81 HVINGKQVEIK 91
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 42.3 bits (95), Expect = 2e-04
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
F+ F DP ++ + ++ GK + + R K + K +K++++
Sbjct: 64 FITFADPSVVDKV---IEDTHVINGKQVEIKRTIPKGAGGNQSK----DIKTKKI----- 111
Query: 181 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT 354
+V + T+ ++ L+ FA +G + +V+ E RS+GFGFV F S E + ++
Sbjct: 112 ---FVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 355 EMN 363
+ N
Sbjct: 169 KGN 171
Score = 35.9 bits (79), Expect = 0.017
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 357
+++ L + K F +G IT + +M + G+ +GFGF+ F+ P K + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 358 --MNGRIVGTK 384
+NG+ V K
Sbjct: 81 HVINGKQVEIK 91
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
L V + ID + L+ + FG + VM + GRS+GFG+V F+S E+A A+
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--K 62
Query: 361 NGRIVGTKPLYVALAQRKEDRK 426
+G + L V +A KE+ +
Sbjct: 63 GEHFLGNRILEVKVATPKEEMR 84
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Frame = +1
Query: 94 RAQKKAERQKELK-RKFEQLKSERLTRYQ----GVNLYVKNLDDTIDDERLRKEFAPFGT 258
R +K ++RQ+ L R FE L S+ Q G + V + + +E + F FG
Sbjct: 61 REEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGE 120
Query: 259 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 366
I + + L+ G KG+ + + EEA A++ MNG
Sbjct: 121 IKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 229 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 357
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 1 FVAFEDPDAAERACIE 48
FV F DP+AA++AC++
Sbjct: 52 FVTFCDPEAAQKACVD 67
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 229 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 357
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 1 FVAFEDPDAAERACIE 48
FV F DP+AA++AC++
Sbjct: 52 FVTFCDPEAAQKACVD 67
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAV 351
G +LYV L + + L FA G +T ++L+ S+GFGF+ S +A + +
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 352 TEMNGRIVGTKPLYVALAQRKEDR 423
++ ++ + + V A+R+ R
Sbjct: 134 RSLDHSVLQGRVITVEKARRRRGR 157
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 41.5 bits (93), Expect = 3e-04
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER--------QKELKRKFEQLKS 156
FV F + AE A + NG E ++ +++ A KKA K + + +L+S
Sbjct: 171 FVEFASVNEAEEALQKKNG-ECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLES 229
Query: 157 ------ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFV 315
ER L+V NL + F G + S ++M+ +G+ G+GFV
Sbjct: 230 HPIEEDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFV 289
Query: 316 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 408
F+S +E KA+ NG + +++ +A+
Sbjct: 290 EFASADETKKALENKNGEYLHDHKIFIDVAK 320
Score = 35.9 bits (79), Expect = 0.017
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 363
L+V NL + K F + ++++ G G GFV F+S EA KA+ +MN
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 364 GRIVGTKPLYVALAQ 408
G + ++ +++ + +
Sbjct: 551 GENLRSREIFLDVVE 565
Score = 33.9 bits (74), Expect = 0.067
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 363
L+V NL + F G + ++++ G+ G GFV F+S EA +A+ + N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 364 GRIVGTKPLYVALAQRK 414
G + +++ +A +K
Sbjct: 189 GECLDNNKIFLDVANKK 205
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 41.5 bits (93), Expect = 3e-04
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Frame = +1
Query: 103 KKAERQKELKR--KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 276
+K + ++ L R K +K+ TR ++V L ++++ L+ F +G I ++
Sbjct: 133 RKVDLKRTLPRGDKDTDIKAVSKTR----KIFVGGLPPLLEEDELKNYFCVYGDIIEHQI 188
Query: 277 MLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 414
M + GRS+GFGFV F + + + ++ +G K + + A+ K
Sbjct: 189 MYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 357
L+V + E F FG + + +M + G +GFGFV F+ A K + E
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +1
Query: 115 RQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-- 288
+Q E+KR + S ++ ++V + ++DD+ ++ F FG + ++M +
Sbjct: 109 KQVEIKRTIPR-GSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHST 167
Query: 289 GRSKGFGFVCFSSPE 333
GRS+GFGFV + S +
Sbjct: 168 GRSRGFGFVTYESED 182
Score = 31.5 bits (68), Expect = 0.36
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
++V L K F +G IT + +M + G+ +GFGFV ++ K + +
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD- 102
Query: 361 NGRIVG 378
N I+G
Sbjct: 103 NHIIIG 108
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 41.1 bits (92), Expect = 4e-04
Identities = 29/110 (26%), Positives = 55/110 (50%)
Frame = +1
Query: 97 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 276
+Q+ +R + E + E L+R L+V+N+D +I+D L F FG + +
Sbjct: 187 SQRDGKRGSNVSTVAEHPQGEILSRI----LFVRNVDSSIEDCELGVLFKQFGDV---RA 239
Query: 277 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 426
+ G+++GF V + A KA ++GR++ + L + + KE+ K
Sbjct: 240 LHTAGKNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIRYSIPKENPK 289
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 41.1 bits (92), Expect = 4e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 357
N++V+ L E L+ F +G IT V+++ GR+KGFGFV F + + A A+
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 223
Query: 358 MNGRI 372
R+
Sbjct: 224 PEKRM 228
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 41.1 bits (92), Expect = 4e-04
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Frame = +1
Query: 49 LNGKELVEGKPLYVGRAQKKAERQKE------LKRKFEQLKSE-RLTRYQGVN-----LY 192
L + GKP+ V +A +K E ++ L+RK +Q+ R GV ++
Sbjct: 64 LRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIF 123
Query: 193 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG---RSKGFGFVCFSSPEEATKAVTEMN 363
V L +E + F FG T VM DG R +GFGFV + S E++ + V + N
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVM-HDGVTNRPRGFGFVTYDS-EDSVEVVMQSN 181
Query: 364 GRIVGTKPLYVALAQRKE 417
+ K + V A KE
Sbjct: 182 FHELSDKRVEVKRAIPKE 199
Score = 40.7 bits (91), Expect = 6e-04
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +1
Query: 172 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATK 345
Y L+V + +E L++ F+ +G + A V E G+ +GFGFV F++ + K
Sbjct: 3 YDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVK 62
Query: 346 AVTEMNGRIVGTKPLYVALAQRKED 420
A+ + + I+G KP+ V A RK +
Sbjct: 63 ALRDTH-FILG-KPVDVRKAIRKHE 85
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 40.3 bits (90), Expect = 8e-04
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 354
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 355 EMNGRIVGTKPLYVAL 402
+ N + KP+ + +
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 40.3 bits (90), Expect = 8e-04
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 354
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 355 EMNGRIVGTKPLYVAL 402
+ N + KP+ + +
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 40.3 bits (90), Expect = 8e-04
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 354
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 355 EMNGRIVGTKPLYVAL 402
+ N + KP+ + +
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 40.3 bits (90), Expect = 8e-04
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
L ++NL LR F FG + + G +GFGFV + E+A +A+ M
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 361 NGRIVGTKPLYVALAQRKEDRK 426
N +++G + + + A+ E+RK
Sbjct: 109 NHKVIGGREIAIVFAE--ENRK 128
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 40.3 bits (90), Expect = 8e-04
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
+YV NLD + + L EF FG + S V R G+ F+ F P +A A+ ++G
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVA---RRPPGYAFLDFEDPRDARDAIRALDG 60
Query: 367 R 369
+
Sbjct: 61 K 61
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 40.3 bits (90), Expect = 8e-04
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 286 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 429
DG+S+ FGF+ F S +EA +A+ N +GT + V +A + D A
Sbjct: 5 DGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENA 52
Score = 35.9 bits (79), Expect = 0.017
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKA 348
L+VKN+ LR+ F+PFG I S ++ ++ G+ G+ FV F + +EA A
Sbjct: 671 LHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNA 725
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 40.3 bits (90), Expect = 8e-04
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 360
L+V L+ +DE L F+ FGT+ SA V+ + G S + F+ F + E +A +M
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 361 NGRIVGTKPLYVALAQ 408
+ ++ + ++V +Q
Sbjct: 305 DNALIDDRRIHVDFSQ 320
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/90 (28%), Positives = 44/90 (48%)
Frame = +1
Query: 139 FEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVC 318
F QL + QG +L + NL+ T+ LR F +G + K + E + FV
Sbjct: 170 FPQLNAVPEGNNQG-SLVIMNLEPTVSSSTLRHIFQVYGEV---KQVRETPCKREQRFVE 225
Query: 319 FSSPEEATKAVTEMNGRIVGTKPLYVALAQ 408
F +A KA+ MNG+++ KP+ + ++
Sbjct: 226 FFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 351
G LYV L + D+ L FA G + S +++E S+GF FV SS ++A + +
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 352 TEMNGRIV 375
+N ++
Sbjct: 131 KYLNQSVL 138
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 351
G LYV L + D+ L FA G + S +++E S+GF FV SS ++A + +
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 352 TEMNGRIV 375
+N ++
Sbjct: 130 KYLNQSVL 137
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/112 (21%), Positives = 52/112 (46%)
Frame = +1
Query: 61 ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 240
+L +G + R + + ++ + ++ + + + R +YV ++D + +E L
Sbjct: 132 KLADGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRR---TVYVSDIDQQVTEENLAGV 188
Query: 241 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 396
F G + +V + F F+ F++ EE +A M+G ++G PL V
Sbjct: 189 FINCGQVVDCRVCGDPNSVLRFAFIEFTN-EEGARAALSMSGTVLGFYPLKV 239
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
+YV NLD + + L EF FG I S V R G+ F+ F +A A+ E++G
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVA---RRPPGYAFLDFEDSRDARDAIREVDG 60
Query: 367 R 369
+
Sbjct: 61 K 61
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 223 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 384
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 223 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 384
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 223 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 384
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 363
L+V +L+ ++ + + F FG + +M ++ R S+G GFV +SS E A A+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 364 GRIV---GTKPLYVALAQRKEDR 423
G +PL V A+ K +
Sbjct: 273 GTYTMRGCNQPLIVRFAEPKRPK 295
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 363
L+V +L+ ++ + + F FG + +M ++ R S+G GFV +SS E A A+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 364 GRIV---GTKPLYVALAQRKEDR 423
G +PL V A+ K +
Sbjct: 273 GTYTMRGCNQPLIVRFAEPKRPK 295
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
L+ NL I+ + F G + + +DG +GFG V F+S EEA KA+ E
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL-EF 357
Query: 361 NGRIVGTKPLYVALAQRKEDR 423
+GR + + + + +AQ + +R
Sbjct: 358 HGRPLLGREIRLDIAQERGER 378
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCFSSPEEATKA 348
+G ++YV++L + + L EF FG IT+ + + + R G +GFV F + A +A
Sbjct: 317 EGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRA 376
Query: 349 VTEMNGRIVGTK 384
+ +I G +
Sbjct: 377 IEASPVKIGGLR 388
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +1
Query: 166 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEA 339
++ Q L ++NL ++ F+ G + + E G KGF FV F+ ++A
Sbjct: 326 SKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDA 385
Query: 340 TKAVTEMNGRIVGTKPLYVALAQRK 414
A+ + NG + G +P+ V A K
Sbjct: 386 ANAIKKFNGHMFGKRPIAVDWAVPK 410
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 357
+L V N+ + L FA +G + + + G S+GF FV + +EA KAV
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 358 MNGRIVGTKPLYVALAQ 408
++GR+V + + V A+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 357
+L V N+ + L FA +G + + + G S+GF FV + +EA KAV
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 358 MNGRIVGTKPLYVALAQ 408
++GR+V + + V A+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 37.9 bits (84), Expect = 0.004
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV FED AE A + G+ K + ++ R + + ++R T+
Sbjct: 13 FVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTK--- 69
Query: 181 VNLYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTE 357
L+V N D ER + + F P+G + + ++ + F FV F++ E+ATKA+
Sbjct: 70 -TLFVINFDPIRTRERDMERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDS 122
Query: 358 MNGRIVGTKPLYVALAQR----KEDRKA 429
+ + K + V A R +EDR A
Sbjct: 123 THNSKLLDKVVSVEYALREAGEREDRYA 150
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 37.9 bits (84), Expect = 0.004
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 180
FV FED AE A + G+ K + ++ R + + ++R T+
Sbjct: 39 FVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTK--- 95
Query: 181 VNLYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTE 357
L+V N D ER + + F P+G + + ++ + F FV F++ E+ATKA+
Sbjct: 96 -TLFVINFDPIRTRERDMERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDS 148
Query: 358 MNGRIVGTKPLYVALAQR----KEDRKA 429
+ + K + V A R +EDR A
Sbjct: 149 THNSKLLDKVVSVEYALREAGEREDRYA 176
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 37.1 bits (82), Expect = 0.007
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF--SSPEEATKAV 351
GV L+V L +++ + L K F+P GT+ + + + GRS F ++ F SS TK
Sbjct: 9 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRS--FAYIDFSPSSTNSLTKLF 66
Query: 352 TEMNG 366
+ NG
Sbjct: 67 STYNG 71
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 37.1 bits (82), Expect = 0.007
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 354
G LY+ NLD + +E +++ F+ G + + + GRSKG V FS +A AV
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 355 EMN 363
N
Sbjct: 167 RYN 169
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 37.1 bits (82), Expect = 0.007
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 351
++V NL + LR+ F FG + A V+ E GRSKG+GF+ F +A+
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 37.1 bits (82), Expect = 0.007
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 357
N++V+ E L+ F +G I V+++ GR KG+GFV F + + A +A+
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468
Query: 358 MNGRI 372
R+
Sbjct: 469 PEKRM 473
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 36.7 bits (81), Expect = 0.009
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
LY+ + + + F+ FGT+ +V + G+SK FGF+ F PE A A M
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 361 N 363
N
Sbjct: 122 N 122
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 36.7 bits (81), Expect = 0.009
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 175 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCF 321
+G NL++ N+ D+ L F FG + SAKV ++ G SK FG + F
Sbjct: 346 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
Score = 35.9 bits (79), Expect = 0.017
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 363
L+V L + + ++ F+ +GTI +++ SKG F+ + + E+A A+ +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 364 G--RIVG-TKPLYVALAQRKEDR 423
G ++ G T PL V A + +R
Sbjct: 168 GKHKMEGSTVPLVVKWADTERER 190
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 36.7 bits (81), Expect = 0.009
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAV 351
G +LYV L + + L FA G +T ++L+ S+GFGF+ S +A + +
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 352 TEMNGRIV 375
++ ++
Sbjct: 104 RSLDHSVL 111
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 36.3 bits (80), Expect = 0.012
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
LYV+NL I E + F +G I ++ D +KG FV + +A AV ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGC-DKATKGTAFVVYEDIYDAKNAVDHLSG 79
Query: 367 RIVGTKPLYVALAQRKEDRK 426
V + L V Q + K
Sbjct: 80 FNVANRYLIVLYYQHAKMSK 99
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 36.3 bits (80), Expect = 0.012
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKEL-VEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQ 177
FV FED AE A +L+ E + L V A+ + R + + LK +
Sbjct: 39 FVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTK----- 93
Query: 178 GVNLYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 354
L+V N D E + K F P+G +T+ ++ + F FV F + E+ATKA+
Sbjct: 94 --TLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------RNFSFVQFETQEDATKALE 145
Query: 355 EMNGRIVGTKPLYVALAQRKEDRK 426
+ + + V A + +D +
Sbjct: 146 ATQRSKILDRVVSVEYALKDDDER 169
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 36.3 bits (80), Expect = 0.012
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = +1
Query: 100 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 279
++ AER +++ + + E L + ++V L + L F +G I K +
Sbjct: 104 KEAAERHRDVANRIRIVADEDLVHRK---IFVHGLGWDTKADSLIDAFKQYGEIEDCKCV 160
Query: 280 LE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 405
++ G+SKG+GF+ F S A A+ + +I GT+ LA
Sbjct: 161 VDKVSGQSKGYGFILFKSRSGARNALKQPQKKI-GTRMTACQLA 203
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 35.1 bits (77), Expect = 0.029
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 351
++YV N+D E ++ F GT+ ++++ G+ KGF +V F E +A+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 352 -TEMNGRIVGTKP 387
+E++GR + P
Sbjct: 150 ESELHGRQLKVSP 162
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 35.1 bits (77), Expect = 0.029
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 351
++YV N+D E ++ F GT+ ++++ G+ KGF +V F E +A+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 352 -TEMNGRIVGTKP 387
+E++GR + P
Sbjct: 150 ESELHGRQLKVSP 162
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 35.1 bits (77), Expect = 0.029
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Frame = +1
Query: 100 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI---DDERLRKEFAPFGTITSA 270
Q + E + + K E+ ++ + Q ++V NL I + E ++F P +
Sbjct: 138 QFRDEFRSDTKPPEEETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILI 197
Query: 271 KVMLEDGRSKGFGFVCFSSPEEATKAV----TEMNGRIVGTK 384
K E ++ GFGF+ +++ + A KAV E +GRI+ K
Sbjct: 198 KGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 35.1 bits (77), Expect = 0.029
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +1
Query: 202 LDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG-------FVCFSSPEEATKAVTEM 360
+DD ++DE + E +GT+T +V++ + F FV FS PEE TKA+ ++
Sbjct: 296 VDDELEDE-VGGECGKYGTVT--RVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDL 352
Query: 361 NGRIVGTKPLYVALAQRKEDRKAHL 435
+GR G + + ++ K L
Sbjct: 353 DGRYFGGRTVRATFYDEEKFSKNEL 377
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 34.7 bits (76), Expect = 0.038
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 24/150 (16%)
Frame = +1
Query: 1 FVAFEDPDAAERACIELNGKELVEGKPLYVGRA-----QKKAERQKELKRKFEQLKSERL 165
F ++DP + AC LNG ++ + K L V RA Q K E+++ L +Q+ +RL
Sbjct: 420 FCVYQDPSVTDIACAALNGIKMGD-KTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRL 478
Query: 166 TRYQGVN-------LYVKNLDDTIDDER-------LRKEFAPFGTITSAKVML---EDGR 294
G V DD DDE +R+E FG + + + +
Sbjct: 479 MFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDP 538
Query: 295 SKGFG--FVCFSSPEEATKAVTEMNGRIVG 378
+ G G F+ ++ + ++KA + MNGR G
Sbjct: 539 TPGVGKVFLEYADVDGSSKARSGMNGRKFG 568
Score = 31.5 bits (68), Expect = 0.36
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
++V L + ++R+ FG + ++ E G SKG+ F + P A +
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 361 NGRIVGTKPLYVALA 405
NG +G K L V A
Sbjct: 437 NGIKMGDKTLTVRRA 451
>At2g15500.1 68415.m01774 hypothetical protein
Length = 132
Score = 34.3 bits (75), Expect = 0.050
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 70 EGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 186
+ K V RAQKK+ER+ ELK +EQ E ++Q N
Sbjct: 39 DDKQWVVDRAQKKSEREMELKVPYEQSLKEIADKFQSYN 77
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 34.3 bits (75), Expect = 0.050
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
+YV ++D ++ +E L F+ G + ++ + F FV FS + A A++ + G
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS-LGG 188
Query: 367 RIVGTKPLYV 396
++G P+ V
Sbjct: 189 TMIGYYPVRV 198
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 33.9 bits (74), Expect = 0.067
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
L+V+N++ +++D L F PFG I S + +S+GF + + A A+ +
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRS---LYTACKSRGFVMISYYDIRAAHAAMRALQN 243
Query: 367 RIVGTKPLYVALAQRKED 420
++ + L + + KE+
Sbjct: 244 TLLRKRTLDIHFSIPKEN 261
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 33.9 bits (74), Expect = 0.067
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
L+V+N++ +++D L F PFG I S + +S+GF + + A A+ +
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRS---LYTACKSRGFVMISYYDIRAAHAAMRALQN 256
Query: 367 RIVGTKPLYVALAQRKED 420
++ + L + + KE+
Sbjct: 257 TLLRKRTLDIHFSIPKEN 274
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.9 bits (74), Expect = 0.067
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 360
++V L E L F +G I V+++ G++KGFGFV F + + A +A+ E
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165
Query: 361 NGRIV 375
RI+
Sbjct: 166 KKRIL 170
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.9 bits (74), Expect = 0.067
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 360
++V L E L F +G I V+++ G++KGFGFV F + + A +A+ E
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165
Query: 361 NGRIV 375
RI+
Sbjct: 166 KKRIL 170
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 33.9 bits (74), Expect = 0.067
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Frame = +1
Query: 181 VNLYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEAT 342
V LY+KNL D + D+ + F + AK ++++GR +G F+ F S E A
Sbjct: 352 VVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEVAH 411
Query: 343 KAVTEMNGRIVGTKPLYV 396
+A+ +NG + KP+ +
Sbjct: 412 RALNLVNGFVFKGKPMII 429
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.088
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 361 NGRIVGTKPLYVALAQR 411
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.088
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 361 NGRIVGTKPLYVALAQR 411
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.088
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 361 NGRIVGTKPLYVALAQR 411
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 33.5 bits (73), Expect = 0.088
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
+YV +LD + +E+L F G + ++ + F F+ F+ E A A+ ++G
Sbjct: 175 VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTAL-NLSG 233
Query: 367 RIVGTKPLYV 396
++G P+ V
Sbjct: 234 TMLGFYPVKV 243
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
+YV ++D + +E+L F FG + ++ + F F+ F+ E + ++G
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTD-EVGARTALNLSG 210
Query: 367 RIVGTKPLYV 396
++G P+ V
Sbjct: 211 TMLGFYPVKV 220
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 360
+YV + + + L F+ +G I ++ + G +SKGF F+ + AV +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 361 NGRIV 375
NG +V
Sbjct: 98 NGALV 102
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 351
++YV N+D E +++ F GT+ ++ + G+ KGF +V F E ++
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILN 163
Query: 352 -TEMNGR 369
+E++GR
Sbjct: 164 ESELHGR 170
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 32.7 bits (71), Expect = 0.15
Identities = 17/74 (22%), Positives = 39/74 (52%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
+YV ++D+ + +E+L F G + ++ + F F+ F+ E A A+ + +G
Sbjct: 139 VYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALRK-SG 197
Query: 367 RIVGTKPLYVALAQ 408
+ G+ P+ V +++
Sbjct: 198 TMFGSHPIRVFMSK 211
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.15
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 363
+YV NLD + + L EF FG + + V R G+ F+ F +A A++ ++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.15
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 363
+YV NLD + + L EF FG + + V R G+ F+ F +A A++ ++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEFDDERDALDAISALD 59
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 32.3 bits (70), Expect = 0.20
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 351
G L+V +L D L E +G + K E G+SKG+ V F P A+
Sbjct: 233 GAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACK 292
Query: 352 TEMNGRIVGTKPLYVALA 405
+NG +P V A
Sbjct: 293 DALNGYPFNGRPCVVEYA 310
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 32.3 bits (70), Expect = 0.20
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMN 363
L +N+ T E +R F +G++ ++ M + R++G F+ +SPEEA A+ +
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLE 155
Query: 364 GRIVGTKPLYVALAQRKEDR 423
+ L V A+ K+ +
Sbjct: 156 SCEYEGRRLKVDYAKTKKKK 175
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 360
L+V L ++ LR+ + +G I + +++ + G S+G+GFV + + +E +A +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 361 NGRIVGTKPLYV 396
+ ++ + + V
Sbjct: 126 HHSLIDGREIIV 137
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 32.3 bits (70), Expect = 0.20
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 145 QLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCF 321
Q K E + + V NL ++ F + S ++++ +G+ G+GFV F
Sbjct: 146 QSKDETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEF 205
Query: 322 SSPEEATKAVTEMNG 366
+S A KA+ E NG
Sbjct: 206 ASAYGANKALEEKNG 220
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 241 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 372
F+ G I +++++ G G GFV F+S EA KA+ + G+I
Sbjct: 396 FSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTGKI 440
>At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical to
gi:3928758 contains Pfam profile PF04055: radical SAM
domain protein
Length = 374
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 199 NLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS 297
N ++D R+ KE+AP GT+T VML G +
Sbjct: 251 NFKQSLDVLRMAKEYAPAGTLTKTSVMLGCGET 283
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.9 bits (69), Expect = 0.27
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEM 360
L+V +L +++ L++ F FG + ++ ++ + +G G+V F + +A KA M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 361 NGRIVGTK 384
+G + K
Sbjct: 160 DGAQIDGK 167
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.9 bits (69), Expect = 0.27
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEM 360
L+V +L +++ L++ F FG + ++ ++ + +G G+V F + +A KA M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 361 NGRIVGTK 384
+G + K
Sbjct: 160 DGAQIDGK 167
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.5 bits (68), Expect = 0.36
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 223 ERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 384
E + F +G I A ++ + RSKG+GFV F + AT+A + I G +
Sbjct: 31 EAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRR 86
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.1 bits (67), Expect = 0.47
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 241 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 408
F G + S ++++ + + G+GFV F+SP A A+ + NG + +++ +A+
Sbjct: 702 FNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAK 758
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 241 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 405
F G + S ++ + +G GFV F+S EA KA+ NG + L + +A
Sbjct: 584 FKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKNGEYLCGNKLILGMA 639
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 31.1 bits (67), Expect = 0.47
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 169 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKA 348
R G ++Y+K L L EF FG I + + + + FGFV F S A
Sbjct: 308 RALGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQKGFCFGFVEFESASSMQSA 367
Query: 349 V 351
+
Sbjct: 368 I 368
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 31.1 bits (67), Expect = 0.47
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
+YV ++D ++ +E L F+ G + ++ + F FV F+ + A +A++ + G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS-LGG 201
Query: 367 RIVGTKPLYV 396
++G P+ V
Sbjct: 202 TMLGFYPVRV 211
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 30.3 bits (65), Expect = 0.82
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFG-----TITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 351
LY+KNL I ERL+ F G I AK ED R +GFV ++ +A+
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSR---YGFVHYAERTSVMRAL 326
Query: 352 TEMNGRIVGTKPLYVALAQRKEDRKAH 432
+ L LA+ + D+K +
Sbjct: 327 KNTERYEIDGHMLDCTLAKPQADQKTN 353
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR 294
LYV L+ I ++ + F +G + S +VM EDG+
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAEDGK 262
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 172 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 351
+Q NL+V +L + L + F +G I V S+GF F+ + EEA A
Sbjct: 15 FQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVY----SSRGFAFIYYRHVEEAVAAK 70
Query: 352 TEMNG-RIVGTKPL 390
+ G + GT L
Sbjct: 71 EALQGANLNGTNEL 84
>At2g38250.1 68415.m04697 DNA-binding protein-related contains
similarity to DNA-binding protein GI:170271 from
[Nicotiana tabacum]
Length = 289
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +1
Query: 94 RAQKKAERQKELKRKFEQLKSERL 165
R +++AE+++E +RK E+L+ ERL
Sbjct: 225 REKERAEKEEEWRRKMEELEKERL 248
>At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) /
cyclin-dependent kinase inhibitor 7 (ICK7) identical to
cyclin-dependent kinase inhibitor 7 (krp7) [Arabidopsis
thaliana] GI:14422297
Length = 195
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +1
Query: 145 QLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 324
+ K +R + Y+G N+ LDD DD+ LR + +S+ + S GF V S
Sbjct: 3 ETKPKRDSEYEGSNIKRMRLDD--DDDVLRSPTRTLSSSSSSSLAYSVSDSGGFCSVALS 60
Query: 325 SPEE 336
E+
Sbjct: 61 EEED 64
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 178 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCFSS 327
G ++YV+NL +L + F FG I + + + +G FGFV F +
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFET 343
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML---EDGRSKGFGFVCF---SSPEEATK 345
++YV+NL I + +EF FGTI V L +D + FV F +S E A K
Sbjct: 258 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317
Query: 346 A 348
A
Sbjct: 318 A 318
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +1
Query: 184 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML---EDGRSKGFGFVCF---SSPEEATK 345
++YV+NL I + +EF FGTI V L +D + FV F +S E A K
Sbjct: 317 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376
Query: 346 A 348
A
Sbjct: 377 A 377
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 292 RSKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDR 423
+S+G GFV +SS E A A+ +NG +PL V A+ K +
Sbjct: 7 QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 53
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 28.7 bits (61), Expect = 2.5
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Frame = +1
Query: 94 RAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL---RKEFAPFGTIT 264
R + + + K + + +QL S R+ + V Y+ L + DE L ++ F +G +
Sbjct: 41 RKKIQKSKSKSSEGRKQQLTSVRVIQRNLV--YIVGLPLNLADEDLLQHKEYFGQYGKVL 98
Query: 265 ------SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 414
+A V L D ++ + EEA + + ++G I+ KPL K
Sbjct: 99 KVSMSRTASVKLSDNDFLHRRYITYGKEEEAVRCIQAVHGFILDGKPLKACFGTTK 154
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 28.7 bits (61), Expect = 2.5
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 31 ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDD 210
E I L+G+E V +PL V ++ K+ E++ K E+ +++ +R + NL+V + ++
Sbjct: 428 ESVPIALDGEEQVMDRPLGV-KSSKQKEKKVATKTMLEEREADSRSRLE--NLWVLDEEE 484
Query: 211 TIDDERLR-KEFAPFGTITSAKVMLEDGRSKGF 306
+ D L K + K M+E+ + F
Sbjct: 485 QVMDLPLGVKSSKQKERKVATKTMIEEREAANF 517
>At4g12440.2 68417.m01969 adenine phosphoribosyltransferase,
putative strong similarity to SP|P31166 Adenine
phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT)
{Arabidopsis thaliana}; contains Pfam profile PF00156:
Phosphoribosyl transferase domain
Length = 182
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +1
Query: 22 DAAERACI----ELNGKELVEGKPLYV 90
+ E AC+ EL G+E +EGKPLYV
Sbjct: 151 EVIECACVIELPELKGRERLEGKPLYV 177
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 58 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 186
K+ ++ Y QK+ + K+K E + ER+T+ QG N
Sbjct: 508 KQQLDDSERYKLEYQKRYDESNNDKKKLEDIYRERITKLQGEN 550
>At4g35870.1 68417.m05094 expressed protein
Length = 817
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 217 DDERLRKEFAPFGTITSAKVMLEDGRSKGFG--FVCFSSPEEATKAVTE 357
DDE+LRK + S ++GR++G G FV F A KAV +
Sbjct: 311 DDEKLRKLQELRADLESQLAAYKEGRAQGAGVAFVMFKDVYTANKAVQD 359
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 193 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 351
VKNL + F FG I V + + RS +GFV F A +A+
Sbjct: 1080 VKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFKEENAAQRAI 1132
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 27.9 bits (59), Expect = 4.4
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Frame = +1
Query: 70 EGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP 249
EG Y RA KR E+ K E Y V L ++ L +++ ++ + F+
Sbjct: 168 EGAYEYEVRASPPPTGPSRAKRFSEKEKLE----YTEV-LKMRGLPYSVNKPQIIEFFSG 222
Query: 250 FGTITSAK--VMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 423
+ I V DG++ G FV F + EEA +A+ + + +G++ + + R+E R
Sbjct: 223 YKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAK-DKMSIGSRYVELFPTTREEAR 281
Query: 424 KA 429
+A
Sbjct: 282 RA 283
>At4g27370.1 68417.m03929 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1126
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 58 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 198
K LVE K + ++ AE + LK +FE+ K + TR + V+
Sbjct: 1063 KSLVEVKSDSISNRKQHAEELRRLKSRFEKWKKDYKTRLRETKARVR 1109
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 64 LVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 162
L E P Y R + ER+K +K K +Q ++ER
Sbjct: 554 LDEKYPAYKDRHKLAVEREKHIKHKADQARAER 586
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
++V L + ++R+ FG + ++ E G SKG+ F + A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 361 NGRIVGTKPLYVALAQR 411
NG +G K L V A +
Sbjct: 421 NGIKMGDKTLTVRRANQ 437
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
++V L + ++R+ FG + ++ E G SKG+ F + A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 361 NGRIVGTKPLYVALAQR 411
NG +G K L V A +
Sbjct: 421 NGIKMGDKTLTVRRANQ 437
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 360
++V L + ++R+ FG + ++ E G SKG+ F + A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 361 NGRIVGTKPLYVALAQR 411
NG +G K L V A +
Sbjct: 421 NGIKMGDKTLTVRRANQ 437
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 94 RAQKKAERQKELKR---KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP 249
+ +KKA+R KE K+ K +Q K + Q + + DDT++++ +E P
Sbjct: 133 KKEKKAKRNKEKKKEKKKKKQKKINEAAKNQDASAVSCDGDDTVEEQVEEEEIPP 187
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +1
Query: 61 ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 240
E+++ K + + + +KE +F+ L+ ERL + + L V+ + + +DD RL++E
Sbjct: 559 EILDEKQAVYNKERIRISEEKEKFERFQLLEGERLKKEESA-LRVQIMQE-LDDIRLQRE 616
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 27.5 bits (58), Expect = 5.8
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 360
L+V L D + + +G + K E G+SKG+ V F A M
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 361 NGRIVGTKPLYVALA 405
NG I K VA A
Sbjct: 264 NGFIFNGKACVVAFA 278
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFG-----TITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 351
LY+KNL I ERL+ F G I AK ED R +GFV ++ +A+
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSR---YGFVHYAERTSVMRAL 92
>At5g18610.1 68418.m02203 protein kinase family protein contains
eukaryotic protein kinase domain, PROSITE:PS00107
Length = 513
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 46 ELNGKELVEGKPLYVGRAQKKAERQKELKRK 138
+L G+E G P VGR+ + R ++L R+
Sbjct: 452 DLEGQESQRGSPASVGRSSRGTPRNRDLDRE 482
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
L+V L + + + F F ++ + DG +K F F FS + A + +NG
Sbjct: 37 LFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDG-AKPFAFAVFSDLQSAVAVMHALNG 95
Query: 367 RI 372
+
Sbjct: 96 MV 97
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 27.1 bits (57), Expect = 7.7
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +1
Query: 187 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 366
++V+N+ I + L + F PFG IT VML SS A + T +
Sbjct: 8 VHVRNVGHEISENDLLQLFQPFGVITKL-VMLRAKNQALLQMQDVSSAVSALQFFTNVQP 66
Query: 367 RIVGTKPLYVALAQRKE 417
I G + +YV + +E
Sbjct: 67 TIRG-RNVYVQFSSHQE 82
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,977,892
Number of Sequences: 28952
Number of extensions: 182438
Number of successful extensions: 983
Number of sequences better than 10.0: 216
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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