Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.62 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.62 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.62 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   0.82 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   1.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.4  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -3

Query: 387 TRHYLTVVN*EGYREYILSMVLESS 313
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 10  SKYYVTIIDAPGHRDFIKNMITGTS 34


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -3

Query: 387 TRHYLTVVN*EGYREYILSMVLESS 313
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 26  SKYYVTIIDAPGHRDFIKNMITGTS 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -3

Query: 387 TRHYLTVVN*EGYREYILSMVLESS 313
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 83  SKYYVTIIDAPGHRDFIKNMITGTS 107


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = -3

Query: 384 RHYLTVVN*EGYREYILSMVLESS 313
           ++Y+T+++  G+R++I +M+  +S
Sbjct: 84  KYYVTIIDAPGHRDFIKNMITGTS 107


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 520 PDXIMGWHDWVRI*HMTPNRCVH 452
           P+ +MG HD VR+    P R  H
Sbjct: 353 PNWVMGNHDRVRVGTRYPGRADH 375


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 109 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 225
           I+SS  +KT+     +K   + NNY    K+LY + ++I  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 109 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 225
           I+SS  +KT+     +K   + NNY    K+LY + ++I  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 109 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 225
           I+SS  +KT+     +K   + NNY    K+LY + ++I  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,213
Number of Sequences: 438
Number of extensions: 3078
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)