Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H01f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   2.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   5.0  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.7  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 151 ATASSCELSMARYSLRSPSGGALPGW 228
           A  ++  +S A     SPSGG LP W
Sbjct: 189 ALVNAPSVSPASLPSISPSGGFLPKW 214


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -1

Query: 503 YWCCSIVYNLHYIY 462
           ++C SI +N+H ++
Sbjct: 59  FYCVSITFNVHLLF 72


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 142 LALATASSCELSMARYSLRSPSGGALPGWTYVPRTVIPASEYSLIR 279
           L L  A S  + + +    +  G   P   Y P+ +    +YSL+R
Sbjct: 252 LHLTDAVSFPIVLPKVQELARFGAYGPDMIYTPQDIRDLLQYSLVR 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,120
Number of Sequences: 336
Number of extensions: 1878
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)