Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    51   9e-08
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    33   0.020
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    30   0.24 
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    29   0.56 
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    25   5.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.2  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    25   9.0  

>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
            Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 51.2 bits (117), Expect = 9e-08
 Identities = 27/75 (36%), Positives = 39/75 (52%)
 Frame = -1

Query: 275  ISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELLKLQ 96
            ++E +   IT +G +  PGK P  GE KLYL IE   EL V +A +E+ RL+ E +    
Sbjct: 940  VTELTGTSITTKGNFYLPGKNPEPGEEKLYLWIEGPSELVVNRAITELRRLLLEGINHSL 999

Query: 95   TSAHHMVNKARYKVL 51
               +      RY V+
Sbjct: 1000 EGGNKPSASGRYTVV 1014


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 25/76 (32%), Positives = 34/76 (44%)
 Frame = -1

Query: 299 RSMEALALISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLI 120
           +S E L L  EY   G   R    +PG+   E E K Y+A E +  L        I R +
Sbjct: 263 QSDEYLYLCMEYCMGGEFFRALQRRPGRCLSENEAKFYIA-EVTAALEYLHLMGFIYRDL 321

Query: 119 KEELLKLQTSAHHMVN 72
           K E + L  S H M++
Sbjct: 322 KPENILLHESGHIMLS 337


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 401 CDTNKTSSCRIRHEGQSLINNKYNVDCKQYYSTN 502
           CD + T S     E    I N  N++CK+ YSTN
Sbjct: 338 CDFDDTFSALRYSEAARRIKNISNINCKEAYSTN 371


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 248 TVRGTY-VQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELLK 102
           TV G Y VQ  KA  +  +KL  A +   E  V + K+E  +++KEE LK
Sbjct: 44  TVGGVYHVQQKKASHKRSKKLK-AHQDKAESKVNEGKNEAAKVVKEEDLK 92


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 106 RSSSLMSRVISDLALATASSCELSMARYSLRSPSGGALPGWTYV 237
           R + L  R+    A A  SS    +  Y +    GG L GW Y+
Sbjct: 179 RRTELARRLAIFYAAANVSSAFGGLLAYGVFHIKGGKLQGWQYL 222


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 172  LSMARYSLRSPSGGALPGWTYVPRTVI 252
            LS+    L SPS    P W  +PR VI
Sbjct: 1895 LSVLTARLSSPSDSTFPLWAKLPRLVI 1921


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 18  FSVQHLIHNKLQNFISSFVDHVMGRGLEFEE 110
           + + +L++    N  SSF+  +  R LEF+E
Sbjct: 315 YDLINLLYEPFHNIYSSFIKPIDDRRLEFDE 345


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 386 VSGASCDTNKTSSCRIRHEGQSLINNKYNVDCKQYYSTNKYLI 514
           V G+SC   K    +++ EG+  I+N  N   K Y S    L+
Sbjct: 308 VYGSSCYRMKDIESKLQSEGRGFIHN-LNFKAKNYSSKEWALV 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,043
Number of Sequences: 5004
Number of extensions: 31753
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)