Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308H01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 61 6e-10
08_01_0397 - 3509186-3510291,3510322-3512335 56 1e-08
06_03_0461 - 21026440-21026617,21027918-21028127,21028920-21029326 33 0.18
07_03_0293 + 16321539-16321893,16322020-16322207,16322881-163229... 29 1.7
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767... 28 4.0
12_01_1050 + 10798692-10798867,10798972-10799169,10799617-108006... 28 5.2
09_06_0323 - 22337217-22337450,22338263-22339204 28 5.2
06_02_0333 + 14567509-14568081,14568109-14568438,14568642-145695... 28 5.2
05_07_0115 + 27783170-27783331,27783510-27783705,27783825-27784411 28 5.2
03_02_0747 + 10888358-10888481,10888529-10888609,10889011-108892... 28 5.2
07_03_0183 - 14822973-14823139,14823232-14823627,14823861-148240... 27 6.9
11_01_0653 - 5285718-5287094 27 9.1
10_08_0179 + 15483854-15483968,15484196-15484302,15485211-154853... 27 9.1
08_02_0348 - 16075103-16075492,16076170-16076469 27 9.1
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 60.9 bits (141), Expect = 6e-10
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = -1
Query: 290 EALALISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKE 114
E L I +++EA IT RGT++ GK ERKLYL IE EL+V KAKSE+ R++++
Sbjct: 813 ETLGPIQDWTEAAITTRGTFIPQGKIVGANERKLYLFIEGPTELSVKKAKSELKRVLED 871
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 56.4 bits (130), Expect = 1e-08
Identities = 28/59 (47%), Positives = 38/59 (64%)
Frame = -1
Query: 290 EALALISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKE 114
E L I E++ A IT RGT+ GK ERKLYL IE EL+V KAK+E+ R++++
Sbjct: 961 ETLGPIQEWTGAAITTRGTFFPQGKIVGANERKLYLFIEGPTELSVKKAKAELKRVLED 1019
>06_03_0461 - 21026440-21026617,21027918-21028127,21028920-21029326
Length = 264
Score = 32.7 bits (71), Expect = 0.18
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 127 RVISDLALATASSCELSMARYSLRSPSGGALPGWTY-VPRTVIPASEYSLIRASASID 297
R SD A+A A S L+ A +L S GGA P W + V T++ + Y + S++
Sbjct: 84 RYASDSAVAAADS--LAFAARALASGGGGARPAWVFDVDETLLTNAPYYAVNGWGSLE 139
>07_03_0293 +
16321539-16321893,16322020-16322207,16322881-16322904,
16323497-16323550,16323854-16323944,16324715-16324815,
16324949-16324999,16326626-16326754,16327772-16327834,
16327928-16328171,16329628-16329776,16329855-16329944,
16330343-16330477,16330579-16330635,16331079-16331135,
16332299-16332336,16332532-16332601,16332971-16333207
Length = 710
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 85 WAEVWSLRSSSLMSRVISDLALATASSCELSMARYSLR 198
WA VW+L S +S AL ++C LSM +S R
Sbjct: 83 WAGVWALLSPHRARIAVSLAALLACTTCTLSMPLFSGR 120
>11_02_0042 -
7672565-7672729,7672902-7672977,7673409-7674132,
7674684-7674708,7675041-7675486,7676643-7676862,
7677609-7678459,7678697-7679555
Length = 1121
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 299 RSMEALALISEYSEAGITVRGTYVQPGKAPPEGERK 192
+S + + +E G V +++P APP+GE+K
Sbjct: 42 KSFMTTSCVINPNEIGSNVSQKHIEPAAAPPKGEKK 77
>12_01_1050 +
10798692-10798867,10798972-10799169,10799617-10800649,
10800866-10801219
Length = 586
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 51 QNFISSFVDHVM--GRGLEFEELFLDEPRYLGFGFGN 155
+ FI S +D + +G +FE L +E L FGFG+
Sbjct: 369 ERFIGSLIDMFLHKSKGSQFENLAGEELAQLSFGFGS 405
>09_06_0323 - 22337217-22337450,22338263-22339204
Length = 391
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -1
Query: 248 TVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITR 126
T Y G + PE R YLA+ + ELAV E R
Sbjct: 131 TTDAKYPAAGSSSPEPTRDYYLAVVADGELAVLLGGGEAAR 171
>06_02_0333 +
14567509-14568081,14568109-14568438,14568642-14569550,
14569598-14569777,14570416-14570698,14571339-14571832
Length = 922
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +1
Query: 157 ASSCELSMARYSLRSPSGGALPGWTYVPRTVIPASEYSLIRASASID 297
+SS + + Y GA PGWT PR I S + ASAS D
Sbjct: 775 SSSSSIPVQMYEAGWAPTGAAPGWTQAPRHSIGVSTW----ASASED 817
>05_07_0115 + 27783170-27783331,27783510-27783705,27783825-27784411
Length = 314
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 462 LLIKLCPSC--RIRHEEVLFVSQDAP 391
+L+K+CPSC R R+E+ QD P
Sbjct: 38 VLVKMCPSCGHRARYEQETTTIQDLP 63
>03_02_0747 +
10888358-10888481,10888529-10888609,10889011-10889227,
10889350-10889460,10889615-10889660,10889744-10889853,
10889926-10890429,10891466-10891594,10891934-10892230,
10892322-10892680,10892968-10893016,10893124-10893184,
10893429-10893578,10893659-10893796,10894525-10894805,
10895005-10895050
Length = 900
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 389 SGASCDTNKTSSCRIRHEGQSLINNKYNVDCKQYYSTNKYLI 514
SG +N+TS+ Q L+ ++Y+ D YY+T++ ++
Sbjct: 259 SGPKIQSNETSNVVQVRTFQDLLKDEYDADLFDYYATSQLVL 300
>07_03_0183 -
14822973-14823139,14823232-14823627,14823861-14824005,
14824174-14824380
Length = 304
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/49 (38%), Positives = 21/49 (42%)
Frame = +1
Query: 160 SSCELSMARYSLRSPSGGALPGWTYVPRTVIPASEYSLIRASASIDLRN 306
SS M Y G PGWT PR I S + ASAS D R+
Sbjct: 187 SSSSTPMQMYEAGWEPTGDAPGWTQAPRHSIGVSSW----ASASEDRRH 231
>11_01_0653 - 5285718-5287094
Length = 458
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -1
Query: 275 ISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLI 120
I+ + E+G+TVR PG +++ A+E + +L V A S + ++
Sbjct: 190 IALFQESGLTVRDIVKMPGWLFTFNPKRVEAAVERTGKLGVELASSRLKYML 241
>10_08_0179 +
15483854-15483968,15484196-15484302,15485211-15485304,
15485537-15485637,15486143-15486199,15486614-15486761,
15486982-15487049
Length = 229
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 468 YLLLIKL-CPSCRIRHEEVLFVSQDAPETSSHRCIDIFL 355
YL+L+K C C + H LFV+ + R IDI +
Sbjct: 166 YLVLLKFSCQVCVLNHTISLFVNSQRFACNQERSIDILM 204
>08_02_0348 - 16075103-16075492,16076170-16076469
Length = 229
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 157 ASSCELSMARYSLRSPSGGALPGWTYVPRTVIPASEYSLIRASASID 297
+SS M Y + G PGWT PR I S + ASAS D
Sbjct: 124 SSSSSTPMQMYEVGWEPTGDAPGWTQAPRHSIRVSSW----ASASED 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,128,340
Number of Sequences: 37544
Number of extensions: 218842
Number of successful extensions: 725
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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