Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               61   6e-10
SB_45302| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85)              27   7.1  

>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 39/93 (41%), Positives = 49/93 (52%), Gaps = 25/93 (26%)
 Frame = -1

Query: 302 LRSMEALALISEYSEAGITVRGTYVQP-------------------------GKAPPEGE 198
           + S E +  I+EYSE  +TVRGTY  P                         GK P EGE
Sbjct: 457 ITSKETIMTITEYSECAVTVRGTYFPPDSYNFKTVITLDSDILSTKHALVVSGKEPKEGE 516

Query: 197 RKLYLAIESSQELAVAKAKSEITRLIKEELLKL 99
           RK+YL IE   E A+  AKSEI R++KEEL++L
Sbjct: 517 RKIYLYIEGPSERAIQLAKSEIKRIVKEELVRL 549


>SB_45302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 163 SCELSMARYSLRSPSGGALPGWTYVPRTVIPASEYSLIRASASID 297
           SC+  + R  L SPSGG +P    +PR         + R   S+D
Sbjct: 364 SCQDQVFRSYLPSPSGGKMPAACTIPRNGGKGELKVIYRCEMSLD 408


>SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85)
          Length = 604

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 380 ELVSGASCDTNKTSSCRIRHEGQSLINNKYNVDCKQYYST 499
           +L  G++CD  K+S+C +       +      D  + YST
Sbjct: 131 DLTKGSTCDLTKSSTCDLTKSSTCDLTKSSTCDLTRNYST 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,590,734
Number of Sequences: 59808
Number of extensions: 237571
Number of successful extensions: 784
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)