Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical ...    70   9e-13
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z81461-1|CAB03833.1|  944|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AY533306-1|AAS21308.1|  383|Caenorhabditis elegans BRE-4 protein.      27   6.2  
AY130767-1|AAM95168.1|  383|Caenorhabditis elegans UDPGalNAc:Glc...    27   6.2  
AC025727-7|AAG23384.1|  383|Caenorhabditis elegans Bt (bacillus ...    27   6.2  

>AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical
            protein F53H1.1 protein.
          Length = 970

 Score = 70.1 bits (164), Expect = 9e-13
 Identities = 34/81 (41%), Positives = 50/81 (61%)
 Frame = -1

Query: 296  SMEALALISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIK 117
            S E++  ++E +E GI+VRG +V PGK P  GER+L+L +E+  E  +  AK EI R++K
Sbjct: 890  SRESVGHVAELAEVGISVRGVHVPPGKEPKNGERRLHLLLEARSERNLKAAKEEIIRIMK 949

Query: 116  EELLKLQTSAHHMVNKARYKV 54
            E   +L         +ARYKV
Sbjct: 950  EAFRQLTAQLQRGGTQARYKV 970


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical
           protein F21C10.7 protein.
          Length = 2541

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
 Frame = +1

Query: 328 HFCFFNNLTQKNINAP--MRASFRSILR 405
           HF FF+ LTQ +IN P  +R+++RS+ R
Sbjct: 133 HFGFFSILTQLHINQPINLRSTWRSLNR 160


>Z81461-1|CAB03833.1|  944|Caenorhabditis elegans Hypothetical
           protein C04F12.1 protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 21  SVQHLIHNKLQNFISSF-VDHVMGRGLEFEELFLDEPRYLGFGFGNGQLLRALYGE 185
           S+ HL  +     I S+ V H  G+  + +E+  DEP  +GFGF       A  G+
Sbjct: 656 SISHLWGDTSNTLIISYDVCHSSGKVYKKDEI-CDEPSCVGFGFNGTACPEAFIGD 710


>AY533306-1|AAS21308.1|  383|Caenorhabditis elegans BRE-4 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 161 LAVAKAKSEITRLIKEELLKLQTSAHHMVNKARYKVL 51
           +A  K     T++ + +++K  T A + VNK RYK++
Sbjct: 295 MAGLKVSRYPTQIARYKMIKHSTEATNPVNKCRYKIM 331


>AY130767-1|AAM95168.1|  383|Caenorhabditis elegans
           UDPGalNAc:GlcNAc{beta}-R
           {beta}1,4-N-acetylgalactosaminyltransferase protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 161 LAVAKAKSEITRLIKEELLKLQTSAHHMVNKARYKVL 51
           +A  K     T++ + +++K  T A + VNK RYK++
Sbjct: 295 MAGLKVSRYPTQIARYKMIKHSTEATNPVNKCRYKIM 331


>AC025727-7|AAG23384.1|  383|Caenorhabditis elegans Bt (bacillus
           thuringiensis) toxinresistant protein 4 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 161 LAVAKAKSEITRLIKEELLKLQTSAHHMVNKARYKVL 51
           +A  K     T++ + +++K  T A + VNK RYK++
Sbjct: 295 MAGLKVSRYPTQIARYKMIKHSTEATNPVNKCRYKIM 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,170,667
Number of Sequences: 27780
Number of extensions: 180397
Number of successful extensions: 486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)