Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila...    58   4e-09
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    57   8e-09
At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family...    34   0.050
At3g25010.1 68416.m03126 disease resistance family protein conta...    29   1.9  
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...    28   4.4  
At1g59312.1 68414.m06676 hypothetical protein                          28   4.4  
At1g58936.1 68414.m06664 hypothetical protein                          28   4.4  
At1g58643.1 68414.m06656 hypothetical protein                          28   4.4  
At4g25450.1 68417.m03665 ABC transporter family protein similar ...    27   5.8  
At4g00980.1 68417.m00132 zinc knuckle (CCHC-type) family protein...    27   5.8  
At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r...    27   7.7  
At5g54020.1 68418.m06719 expressed protein                             27   7.7  
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun...    27   7.7  
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik...    27   7.7  
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ...    27   7.7  

>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar to
            RNA helicase GB:A57514 GI:897915 from [Rattus
            norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
            box helicase, PF00271: Helicase conserved C-terminal
            domain
          Length = 989

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 32/80 (40%), Positives = 45/80 (56%)
 Frame = -1

Query: 290  EALALISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEE 111
            E L  ISE+S A IT RG + + G+ P   ERKLYL +E   E++V  AK+E+ R++ E+
Sbjct: 911  ETLGPISEWSGASITTRGKFYEAGRIPGPEERKLYLFVEGPTEISVKTAKAELKRVL-ED 969

Query: 110  LLKLQTSAHHMVNKARYKVL 51
            +     S        RY VL
Sbjct: 970  ITNQTFSLPGGAQSGRYSVL 989


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
            RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
            profiles PF00270: DEAD/DEAH box helicase, PF00271:
            Helicase conserved C-terminal domain
          Length = 1166

 Score = 56.8 bits (131), Expect = 8e-09
 Identities = 33/80 (41%), Positives = 45/80 (56%)
 Frame = -1

Query: 290  EALALISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEE 111
            E L  ISE++ A IT RG +   G+ P  GERKLYL IE   E +V  AK+E+ R++ E+
Sbjct: 1088 ETLGPISEWTGAAITTRGQFYPTGRIPGPGERKLYLFIEGPSEKSVKHAKAELKRVL-ED 1146

Query: 110  LLKLQTSAHHMVNKARYKVL 51
            +     S+       RY VL
Sbjct: 1147 ITNQAMSSLPGGASGRYSVL 1166


>At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family
           protein sequencing discrepancy between cDNA and genomic
           sequence prevents representation of entire coding
           sequence
          Length = 578

 Score = 34.3 bits (75), Expect = 0.050
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -1

Query: 275 ISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEI 132
           I   + A +  RG Y +P  APP+GE+ LYL I ++ +L + +    I
Sbjct: 114 IQRSTGAVVITRGKY-RPPNAPPDGEKPLYLHISAAAQLQLKETTERI 160


>At3g25010.1 68416.m03126 disease resistance family protein contains
           leucine rich-repeat (LRR) domains (23 copies)
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 881

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 33  LIHNKLQNFISSFVDHVMGRGLEFEELFLDEPRYLG---FGFGNGQLLRAL 176
           LIHN   NF SS +    G   + E LFL    +LG   F F N  +L AL
Sbjct: 105 LIHN---NFTSSSISSKFGMLNKLEVLFLSSSGFLGQVPFSFSNLSMLSAL 152


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/47 (23%), Positives = 28/47 (59%)
 Frame = -1

Query: 203 GERKLYLAIESSQELAVAKAKSEITRLIKEELLKLQTSAHHMVNKAR 63
           G+RK++L      ++++A ++  I +L+K+  +  + +  H  ++AR
Sbjct: 18  GKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR 64


>At1g59312.1 68414.m06676 hypothetical protein
          Length = 486

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 504 LLVL*YCLQSTLY--LLLIKLCPSCRIRHEEVLFVSQDAPETS 382
           + VL  C  ST+Y   LLI     C ++ EE++F ++DA + S
Sbjct: 8   IYVLMLCTISTVYNTFLLIVCVVGCCVQMEEIVFETKDAVDWS 50


>At1g58936.1 68414.m06664 hypothetical protein
          Length = 486

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 504 LLVL*YCLQSTLY--LLLIKLCPSCRIRHEEVLFVSQDAPETS 382
           + VL  C  ST+Y   LLI     C ++ EE++F ++DA + S
Sbjct: 8   IYVLMLCTISTVYNTFLLIVCVVGCCVQMEEIVFETKDAVDWS 50


>At1g58643.1 68414.m06656 hypothetical protein
          Length = 486

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 504 LLVL*YCLQSTLY--LLLIKLCPSCRIRHEEVLFVSQDAPETS 382
           + VL  C  ST+Y   LLI     C ++ EE++F ++DA + S
Sbjct: 8   IYVLMLCTISTVYNTFLLIVCVVGCCVQMEEIVFETKDAVDWS 50


>At4g25450.1 68417.m03665 ABC transporter family protein similar to
           multidrug resistance protein 2 SP:P21440 from [Mus
           musculus]
          Length = 714

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 85  WAEVWSLRSSSLMSRVISDLALATASSCELSMARYSLR 198
           W  +WSL S   +   +  L L   S+C LSM  +S R
Sbjct: 95  WGLLWSLMSKHKLRLSVCLLTLLGCSTCTLSMPVFSGR 132


>At4g00980.1 68417.m00132 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 488

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 165 GAGRCQSQIRDNAAHQGRAPQTPDLGPSHG 76
           G  +CQS+++  AA  G   +  D   SHG
Sbjct: 160 GIKQCQSKLKSEAARNGDTSEAVDKDSSHG 189


>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 85  WAEVWSLRSSSLMSRVISDLALATASSCELSMARYSLR 198
           W++ W L      S+++ ++ L   S C+L +   S+R
Sbjct: 335 WSKEWPLAVDEERSKLLKEIKLLLVSFCDLKILSCSIR 372


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 450 LCPSCRIRHEEVLFVSQDAPETSSHRC 370
           LC  C++R +   F+     E +SH C
Sbjct: 525 LCSGCKVRCKNPFFIRSTEEEPASHAC 551


>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
           family protein low similarity to RNA polymerase IIA
           largest subunit [Trypanosoma brucei] GI:162215; contains
           InterPro accession IPR000722: RNA polymerase, alpha
           subunit
          Length = 1453

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 519 VKMRYLLVL*YCLQSTLYLLLIKLCPSCRIRHEEVLFVSQDAPE 388
           +   Y ++  Y L+     LL K+CP C+   ++   +++D PE
Sbjct: 74  INFAYSIINPYFLKEVA-ALLNKICPGCKYIRKKQFQITEDQPE 116


>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
           transposon protein GB:AAB95292 GI:2088658 from
           [Arabidopsis thaliana]
          Length = 1148

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 456 IKLCPSCRIRHEEVLFVSQDAPETSS 379
           I +CP CR   EE  FV  D+P T+S
Sbjct: 561 INICPECR---EEHSFVETDSPGTNS 583


>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 393

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +1

Query: 43  INYKTLYLALL----TM*WAEVWSLRSSSLMSRVISDLALATASSCELSMARYSLR 198
           +NYK +   L+    +M  AE     SSS ++  +S  A A ASSC LS  R  L+
Sbjct: 265 MNYKDVLSELVNSLDSMSLAEALQASSSSPVTTPVSAAAAAFASSCGLSNQRLHLQ 320


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,559,562
Number of Sequences: 28952
Number of extensions: 167987
Number of successful extensions: 463
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)