Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0003 + 12149032-12149562,12149662-12149732,12150160-12150421     27   9.1  
12_01_0441 + 3484003-3484374,3485071-3485151,3485242-3485514,348...    27   9.1  
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100...    27   9.1  

>12_02_0003 + 12149032-12149562,12149662-12149732,12150160-12150421
          Length = 287

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 183 ERNHIKKREKKTSLPNFSSPKNIATREALHAREFNWRSFFSK 308
           + NH+KK   K   P F +P+ + +    H  +  +R    K
Sbjct: 7   DANHVKKMFSKIIFPRFGTPRMVVSDGGSHFIDKTFRDLLHK 48


>12_01_0441 +
           3484003-3484374,3485071-3485151,3485242-3485514,
           3485695-3485826,3485903-3486076,3486164-3486393,
           3486562-3486679,3486717-3486743,3486948-3487079,
           3487189-3487323,3487393-3487599,3487772-3487936
          Length = 681

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 457 LNRDALCQSLRRNQTLSVYCAFKTLLRLDEALGVISNFESV 335
           L  +ALC SL   +  +V C  K L ++ +  G +   + V
Sbjct: 140 LGEEALCHSLNETEVTTVVCGQKELKKMIDISGQLDTVKRV 180


>03_01_0130 -
           1007433-1007712,1007739-1007803,1007804-1008001,
           1008103-1008273,1008405-1008553,1008780-1008927,
           1009015-1009083,1009168-1009416,1009516-1009710,
           1009869-1009985,1010205-1011329
          Length = 921

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 228 NFSSPKNI-ATREALHAREFNWRSFFS 305
           +FS P+++  TR+  H  E NWR F S
Sbjct: 843 SFSCPESLECTRQVRHIGEQNWRQFAS 869


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,975,807
Number of Sequences: 37544
Number of extensions: 188723
Number of successful extensions: 405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)