Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G09f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62547-1|AAC47658.1| 1145|Drosophila melanogaster mitochondrial ...    28   6.7  
U60298-1|AAC47290.1| 1145|Drosophila melanogaster DNA polymerase...    28   6.7  
AY089226-1|AAL89964.1| 1145|Drosophila melanogaster AT02241p pro...    28   6.7  
AE014134-2406|AAF53338.1| 1145|Drosophila melanogaster CG8987-PA...    28   6.7  
J04845-1|AAA28817.1|  700|Drosophila melanogaster protein ( D.me...    28   8.8  
BT004495-1|AAO42659.1|  700|Drosophila melanogaster GH24781p pro...    28   8.8  
AE013599-2371|AAF57934.1|  700|Drosophila melanogaster CG6518-PA...    28   8.8  

>U62547-1|AAC47658.1| 1145|Drosophila melanogaster mitochondrial DNA
           polymerase catalyticsubunit precursor protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +3

Query: 285 NWRSFFSK*YFV*EQHRTDSKLEITPSASSSLNKVLKAQYTDSVWLRRKDW 437
           NW  +  +     E    ++K  +   A  + + +L  QY  ++WL  +DW
Sbjct: 407 NWERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDW 457


>U60298-1|AAC47290.1| 1145|Drosophila melanogaster DNA polymerase
           gamma protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +3

Query: 285 NWRSFFSK*YFV*EQHRTDSKLEITPSASSSLNKVLKAQYTDSVWLRRKDW 437
           NW  +  +     E    ++K  +   A  + + +L  QY  ++WL  +DW
Sbjct: 407 NWERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDW 457


>AY089226-1|AAL89964.1| 1145|Drosophila melanogaster AT02241p
           protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +3

Query: 285 NWRSFFSK*YFV*EQHRTDSKLEITPSASSSLNKVLKAQYTDSVWLRRKDW 437
           NW  +  +     E    ++K  +   A  + + +L  QY  ++WL  +DW
Sbjct: 407 NWERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDW 457


>AE014134-2406|AAF53338.1| 1145|Drosophila melanogaster CG8987-PA
           protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +3

Query: 285 NWRSFFSK*YFV*EQHRTDSKLEITPSASSSLNKVLKAQYTDSVWLRRKDW 437
           NW  +  +     E    ++K  +   A  + + +L  QY  ++WL  +DW
Sbjct: 407 NWERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDW 457


>J04845-1|AAA28817.1|  700|Drosophila melanogaster protein (
           D.melanogaster proteinkinase C (dPKC53E) mRNA complete
           cds. ).
          Length = 700

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +3

Query: 87  KEPVQENDP*MNTVHMKYLSV-CVCLFN-IDSI*ER-NHIKKREKKTSLPNFSSPKNIAT 257
           KEPV      ++ V  ++ ++ CV  FN I  + +   H ++  +K  + N   P N++ 
Sbjct: 303 KEPVDGWYKFLSQVEGEHYNIPCVDAFNDIARLRDEVRHDRRPNEKRRMDNKDMPHNMSK 362

Query: 258 REALHAREFNWRSFFSK 308
           R+ + A +FN+     K
Sbjct: 363 RDMIRAADFNFVKVIGK 379


>BT004495-1|AAO42659.1|  700|Drosophila melanogaster GH24781p
           protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +3

Query: 87  KEPVQENDP*MNTVHMKYLSV-CVCLFN-IDSI*ER-NHIKKREKKTSLPNFSSPKNIAT 257
           KEPV      ++ V  ++ ++ CV  FN I  + +   H ++  +K  + N   P N++ 
Sbjct: 303 KEPVDGWYKFLSQVEGEHYNIPCVDAFNDIARLRDEVRHDRRPNEKRRMDNKDMPHNMSK 362

Query: 258 REALHAREFNWRSFFSK 308
           R+ + A +FN+     K
Sbjct: 363 RDMIRAADFNFVKVIGK 379


>AE013599-2371|AAF57934.1|  700|Drosophila melanogaster CG6518-PA
           protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +3

Query: 87  KEPVQENDP*MNTVHMKYLSV-CVCLFN-IDSI*ER-NHIKKREKKTSLPNFSSPKNIAT 257
           KEPV      ++ V  ++ ++ CV  FN I  + +   H ++  +K  + N   P N++ 
Sbjct: 303 KEPVDGWYKFLSQVEGEHYNIPCVDAFNDIARLRDEVRHDRRPNEKRRMDNKDMPHNMSK 362

Query: 258 REALHAREFNWRSFFSK 308
           R+ + A +FN+     K
Sbjct: 363 RDMIRAADFNFVKVIGK 379


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,177
Number of Sequences: 53049
Number of extensions: 346347
Number of successful extensions: 728
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)