Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   1.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 498 YKDXKRTALANDPASIEMRFANLY 427
           Y   K+ A+  +PA +++RF NL+
Sbjct: 173 YLRIKKHAVKFNPAKVKLRFENLF 196


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 351 EITPSASSSLNKVLKAQYTDSVWLRRKDWQS 443
           EIT S+ S +    K  Y  SVW    DW S
Sbjct: 335 EITSSSCSYMAHE-KLSYAFSVWRMEDDWNS 364


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 130 CTVFIQGSFSCTGSLHGLMNVVT 62
           C VF  GS SC  S+  +    T
Sbjct: 149 CLVFSSGSVSCVPSVKHVAKCAT 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,499
Number of Sequences: 438
Number of extensions: 2332
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)