Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07230.1 68418.m00825 protease inhibitor/seed storage/lipid t...    29   2.5  
At1g77590.1 68414.m09034 long-chain-fatty-acid--CoA ligase famil...    27   5.8  
At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    27   5.8  

>At5g07230.1 68418.m00825 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein identical to
           tapetum-specific protein A9 [Precursor] SP| Q00762;
           contains Pfam protease inhibitor/seed storage/LTP family
           domain PF00234
          Length = 91

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 484 TNCASERPCLNRDALCQSLRRNQTLSVYC 398
           +NC +     N+D LC +LR   TL+  C
Sbjct: 52  SNCCAALQATNKDCLCNALRAATTLTSLC 80


>At1g77590.1 68414.m09034 long-chain-fatty-acid--CoA ligase family
           protein / long-chain acyl-CoA synthetase family protein
           (LACS9) similar to LACS 3 [SP|O95573] from Homo Sapiens,
           LACS 3 [SP|Q63151] from Rattus norvegicus; contains Pfam
           HMM hit: AMP-binding enzymes PF00501
          Length = 691

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 457 LNRDALCQSLRRNQTLSVYCAFKTLLRLDEALGVISNFESVRC 329
           L  +ALC SL   +  +V C  K L +L +    +   + V C
Sbjct: 165 LGEEALCHSLNETEVTTVICGSKELKKLMDISQQLETVKRVIC 207


>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 151 VCVFLTSIQFK-NVITLKKEKKKHPCRIF 234
           VC    S+  K N++++ KEKKK   R+F
Sbjct: 541 VCTLKKSVNIKKNMVSISKEKKKEHQRVF 569


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,336,059
Number of Sequences: 28952
Number of extensions: 169345
Number of successful extensions: 399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)