Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    29   0.42 
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        29   0.56 
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    27   1.3  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.2  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    25   5.2  
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.8  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    25   6.8  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   9.0  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   9.0  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    25   9.0  

>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 301 FSHSVECFCCITLITFLTLAFCFSVHFPQLVAMVSGKAFLKSE 173
           F H +  F C+    FL   F F +HF  L     G +F+  E
Sbjct: 280 FQHFLARFFCLIFFPFLFFLFWFYMHFNILTISGPGDSFMSLE 322


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 380 NKYLAS*KEFVEIST-VFSRRIMFLHKFFPFCGMF 279
           NK+ +S   F  +S+ +  +R+ FLH F P C  F
Sbjct: 32  NKFYSSPSTFALLSSYLIEKRLNFLHAFLPHCRSF 66


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 235 FSVHFPQLVAMVSGKAFLKSEASGVHRPLSRKQFI*AFNNLS 110
           + + FP    M   K FL   A   HR + R Q +  FN +S
Sbjct: 266 YGISFPDNKQMQEYKTFLAEAAKRDHRKIGRDQELFFFNEIS 307


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 162 TPEASDFKKALPDTIATNCGKCT--EKQKANVRKVIKVIQQKHST 290
           +P  S F +A    IATNC   T  E  + N+  V+  +  K +T
Sbjct: 604 SPYVSSFAEACIQAIATNCNYSTPAELLRENIDYVVNSVALKLNT 648


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 114 RLLKAYINCFLDKGRCTPEASDFKKALPDTIATNCGKCTEKQK 242
           R +  YIN F D  R   +  D+ K +   +     +C EK K
Sbjct: 307 RRVLQYINGFSDGSRDRQDVEDYLKKVLQELLCEAEECKEKVK 349


>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 303 LVKKHDPSGKHRADFDKFL 359
           ++KK DPSG  R   D+FL
Sbjct: 82  VLKKCDPSGNRRITLDEFL 100


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 344 FRQIPSRKLNIY**VILV*ATLMWGCIG 427
           F+++PS  +N+   + LV  T++ GC G
Sbjct: 365 FKEVPSGDINLESAIALVKPTILLGCSG 392


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 283 CFCCITLITFLTLAFCFSVHFP 218
           CF     I FLT  FCF +  P
Sbjct: 343 CFWVYACIFFLTRVFCFLIDTP 364


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 360 EGICRNQHGVFPKDHVSSQVFPIL 289
           +G C+N  G+FP ++V   V P +
Sbjct: 254 KGSCKNAVGIFPVNYVQRVVEPTI 277


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 404 TLMWGCIGLVTVSFILFTSYMFYDALYFTTVFVIH 508
           ++ W  I L+++  I+FTSY   D L    V +++
Sbjct: 443 SITWIIIILISLFVIIFTSYCDSDGLIGNCVLLVY 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,422
Number of Sequences: 5004
Number of extensions: 38610
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)