Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_6923| Best HMM Match : PAN (HMM E-Value=0.038)                      28   5.4  
SB_24778| Best HMM Match : DUF1409 (HMM E-Value=4.2)                   28   5.4  
SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_21508| Best HMM Match : THAP (HMM E-Value=0.0086)                   27   7.1  
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)                   27   9.4  
SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)                 27   9.4  

>SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 162 TPEASDFKKALPDTIATNCGKCTEKQKANVRKVIKV---IQQKHSTEWEKLVKKHD 320
           TPE  + +K   +       KC +K+K +VR +++V   ++ +++T   ++ K HD
Sbjct: 94  TPEEEERRKLRRERNKVAASKCRQKRKQHVRNLVQVSEALEVQNNTLQSQITKLHD 149


>SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 630

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 301 FSHSVECFCCITLITFLTLAFCFSVHFPQLVAMVSGKAFL 182
           F H V CF  + LI ++ + +C +V F + V+  + KA L
Sbjct: 201 FGHDVFCFVAVFLIPYVIITYCQTVMF-RAVSRSNNKALL 239


>SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -2

Query: 259 TFLTLAFCFSVHFPQLVAMVSGKAFLKSEASGVHRPLSRK 140
           T LT+   F+VHF  LV MV     L   +S VH  L  K
Sbjct: 533 TILTVLGQFAVHFIALVYMVGHAKRLTPSSSAVHVNLESK 572


>SB_6923| Best HMM Match : PAN (HMM E-Value=0.038)
          Length = 95

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 466 VLRCSLFHNCFCYS 507
           V+RC L  NC+CYS
Sbjct: 73  VIRCMLTENCYCYS 86


>SB_24778| Best HMM Match : DUF1409 (HMM E-Value=4.2)
          Length = 74

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 222 KCTEKQKANVRKVIKVIQQKHSTEWEKLVK 311
           K  E+    + K +K +Q+KH T+ E+LVK
Sbjct: 14  KQMERINTKITKDLKDVQEKHKTDKEELVK 43


>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 291 EWEKLVKKHDPSGKHRAD 344
           EWEK V+KH P  + R D
Sbjct: 116 EWEKFVRKHRPDFRARGD 133


>SB_21508| Best HMM Match : THAP (HMM E-Value=0.0086)
          Length = 218

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 291 EWEKLVKKHDPSGKHRAD 344
           EWEK V+KH P  + R D
Sbjct: 48  EWEKFVRKHRPDFRARGD 65


>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
          Length = 671

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
 Frame = +3

Query: 165 PEASDFKKALPDTIATNCGKCTEKQKANVRKVIKVIQQKHSTEWE--KLVKKH------- 317
           PE S F + L   IA  CGKC   ++  +  +   IQ    ++++  K ++K        
Sbjct: 544 PEGS-FPRFLNTFIAHACGKCHNHRETVIEYITSNIQSHQPSQYDVRKSIRKFADLSFPL 602

Query: 318 -DPSGKHRADFDKFLLGS*IFINKLFWFRPHLCGD 419
            +P G+   D D   +     ++ + +FR  L G+
Sbjct: 603 TEPEGEVGQDDDHVFVPVFKMMSSIVYFRRKLSGE 637


>SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)
          Length = 1329

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 270 IQQKHSTEWEKLVKKHDPSGKHRADFD 350
           I++K   EWEK+ K  DP  +  A+ D
Sbjct: 19  IRKKRQEEWEKVRKPDDPIERPEAEVD 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,674,833
Number of Sequences: 59808
Number of extensions: 275370
Number of successful extensions: 862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)