Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   3e-25
SB_57461| Best HMM Match : Pkinase (HMM E-Value=1.1e-34)               35   0.047
SB_28514| Best HMM Match : MazG (HMM E-Value=6)                        30   1.3  
SB_43344| Best HMM Match : Pkinase (HMM E-Value=6.9e-08)               30   1.3  
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)               29   2.3  
SB_43471| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     28   4.1  
SB_2079| Best HMM Match : Pkinase (HMM E-Value=4.2e-10)                27   9.4  

>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score =  111 bits (267), Expect = 3e-25
 Identities = 48/63 (76%), Positives = 56/63 (88%)
 Frame = +2

Query: 278 STMAVPSRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINIT 457
           S+    SRARVYADVN  RPREYWDYES+V++WG Q++Y+LVRKLGRGKYSEVFEAINIT
Sbjct: 351 SSATASSRARVYADVNVHRPREYWDYESHVIEWGQQDNYELVRKLGRGKYSEVFEAINIT 410

Query: 458 NNE 466
           N+E
Sbjct: 411 NDE 413


>SB_57461| Best HMM Match : Pkinase (HMM E-Value=1.1e-34)
          Length = 355

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 392 YQLVRKLGRGKYSEVFEAINITNNE 466
           Y+LVRK+G G + +++ AIN TN E
Sbjct: 19  YRLVRKIGSGSFGDIYLAINTTNGE 43


>SB_28514| Best HMM Match : MazG (HMM E-Value=6)
          Length = 137

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 389 DYQLVRKLGRGKYSEVFEAINITNNE 466
           D+QLV  +G G Y EV++  N+   E
Sbjct: 56  DWQLVESIGEGTYGEVYKVRNVKTGE 81


>SB_43344| Best HMM Match : Pkinase (HMM E-Value=6.9e-08)
          Length = 424

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 389 DYQLVRKLGRGKYSEVFEAINITNNE 466
           D+QLV  +G G Y EV++  N+   E
Sbjct: 56  DWQLVESIGEGTYGEVYKVRNVKTGE 81


>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
          Length = 834

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 383 QEDYQLVRKLGRGKYSEVFEAINITNNE 466
           Q  Y+LVRK+G G + +++  ++  N E
Sbjct: 11  QGKYRLVRKIGSGSFGDIYLCVHTENGE 38


>SB_43471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 222 RTRFPERLSQIKPLVY 269
           RTRFPE +S  KP+VY
Sbjct: 107 RTRFPEEMSDTKPVVY 122


>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 365 VVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 466
           V+D GN   Y   R LG+G ++ V+E  +++ N+
Sbjct: 423 VIDNGNGRRYFRGRLLGKGGFARVYEVTDMSTNK 456


>SB_2079| Best HMM Match : Pkinase (HMM E-Value=4.2e-10)
          Length = 210

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = +2

Query: 389 DYQLVRKLGRGKYSEVFEAINITNNE 466
           ++++ +K+GRG++S V++A    NN+
Sbjct: 24  NFEIEKKIGRGQFSVVYKARCTANNQ 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,127,604
Number of Sequences: 59808
Number of extensions: 271161
Number of successful extensions: 670
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)