Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein ( C.ele...    99   1e-21
AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kina...    99   1e-21
Z35637-6|CAA84685.1|  341|Caenorhabditis elegans Hypothetical pr...    35   0.031
Z66521-10|CAH10788.1|  359|Caenorhabditis elegans Hypothetical p...    31   0.50 
Z66521-9|CAA91402.1|  367|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AL110501-9|CAB54507.2|  802|Caenorhabditis elegans Hypothetical ...    30   0.87 
AL033514-40|CAD36501.1|  802|Caenorhabditis elegans Hypothetical...    30   0.87 
AJ319870-1|CAC67459.1|  802|Caenorhabditis elegans ZYG-8 protein...    30   0.87 
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    30   1.2  
U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center...    29   1.5  
Z81449-6|CAB03764.2|  489|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81449-5|CAB03762.2|  488|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    29   2.0  
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    29   2.0  
U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class c...    29   2.0  
AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.      29   2.0  
Z83216-7|CAB05676.2|  320|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z79600-7|CAI79194.1|  173|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein (
           C.elegans casein kinaseII-alpha gene, complete cds. ).
          Length = 360

 Score =   99 bits (238), Expect = 1e-21
 Identities = 40/59 (67%), Positives = 51/59 (86%)
 Frame = +2

Query: 290 VPSRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 466
           +PSRARVYA+VN  RPREYWDYE+++++WG  +DYQLVRKLGRGKYSEVFE   ++ +E
Sbjct: 4   IPSRARVYAEVNPSRPREYWDYEAHMIEWGQIDDYQLVRKLGRGKYSEVFEGFKMSTDE 62


>AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kinase
           protein 3 protein.
          Length = 360

 Score =   99 bits (238), Expect = 1e-21
 Identities = 40/59 (67%), Positives = 51/59 (86%)
 Frame = +2

Query: 290 VPSRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 466
           +PSRARVYA+VN  RPREYWDYE+++++WG  +DYQLVRKLGRGKYSEVFE   ++ +E
Sbjct: 4   IPSRARVYAEVNPSRPREYWDYEAHMIEWGQIDDYQLVRKLGRGKYSEVFEGFKMSTDE 62


>Z35637-6|CAA84685.1|  341|Caenorhabditis elegans Hypothetical
           protein C03C10.1 protein.
          Length = 341

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +2

Query: 392 YQLVRKLGRGKYSEVFEAINITNNE 466
           Y+L+RK+G G + +++ +IN+TN E
Sbjct: 16  YKLIRKIGSGSFGDIYVSINVTNGE 40


>Z66521-10|CAH10788.1|  359|Caenorhabditis elegans Hypothetical
           protein W02B12.12b protein.
          Length = 359

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 389 DYQLVRKLGRGKYSEVFEAINITNN 463
           D     KLGRGKYS+V++A +  NN
Sbjct: 93  DLDTSNKLGRGKYSKVYKAFDRNNN 117


>Z66521-9|CAA91402.1|  367|Caenorhabditis elegans Hypothetical
           protein W02B12.12a protein.
          Length = 367

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 389 DYQLVRKLGRGKYSEVFEAINITNN 463
           D     KLGRGKYS+V++A +  NN
Sbjct: 93  DLDTSNKLGRGKYSKVYKAFDRNNN 117


>AL110501-9|CAB54507.2|  802|Caenorhabditis elegans Hypothetical
           protein Y79H2A.11 protein.
          Length = 802

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 386 EDYQLVRKLGRGKYSEVFEAINITNNE 466
           E +QLVR +G G  + V+E I+ TNN+
Sbjct: 480 EKFQLVRLIGDGNTAVVYEVIDKTNND 506


>AL033514-40|CAD36501.1|  802|Caenorhabditis elegans Hypothetical
           protein Y79H2A.11 protein.
          Length = 802

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 386 EDYQLVRKLGRGKYSEVFEAINITNNE 466
           E +QLVR +G G  + V+E I+ TNN+
Sbjct: 480 EKFQLVRLIGDGNTAVVYEVIDKTNND 506


>AJ319870-1|CAC67459.1|  802|Caenorhabditis elegans ZYG-8 protein
           protein.
          Length = 802

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 386 EDYQLVRKLGRGKYSEVFEAINITNNE 466
           E +QLVR +G G  + V+E I+ TNN+
Sbjct: 480 EKFQLVRLIGDGNTAVVYEVIDKTNND 506


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 386 EDYQLVRKLGRGKYSEVFEAINITNNE 466
           ED+QL++ LG+G Y +VF+    T ++
Sbjct: 81  EDFQLLKVLGKGGYGKVFQVRKTTGSD 107


>U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center
           kinase family protein2 protein.
          Length = 829

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = +2

Query: 386 EDYQLVRKLGRGKYSEVFEAINITNN 463
           +DY+L++++G G Y EV++A +I ++
Sbjct: 13  DDYELLQRVGSGTYGEVYKARDIRSD 38


>Z81449-6|CAB03764.2|  489|Caenorhabditis elegans Hypothetical
           protein C46F11.5b protein.
          Length = 489

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 369 LTGATKKTISWFASWV 416
           +  AT++T+SWF SW+
Sbjct: 137 IASATRRTVSWFGSWI 152


>Z81449-5|CAB03762.2|  488|Caenorhabditis elegans Hypothetical
           protein C46F11.5a protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 369 LTGATKKTISWFASWV 416
           +  AT++T+SWF SW+
Sbjct: 137 IASATRRTVSWFGSWI 152


>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 368 VDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 466
           + +G  E Y+ + KLG G Y+ VF   +I  N+
Sbjct: 320 IGFGKLETYEKLDKLGEGTYATVFRGRSILTNK 352


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 368 VDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 466
           + +G  E Y+ + KLG G Y+ VF   +I  N+
Sbjct: 353 IGFGKLETYEKLDKLGEGTYATVFRGRSILTNK 385


>U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform a protein.
          Length = 577

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 368 VDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 466
           + +G  E Y+ + KLG G Y+ VF   +I  N+
Sbjct: 230 IGFGKLETYEKLDKLGEGTYATVFRGRSILTNK 262


>AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.
          Length = 577

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 368 VDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 466
           + +G  E Y+ + KLG G Y+ VF   +I  N+
Sbjct: 230 IGFGKLETYEKLDKLGEGTYATVFRGRSILTNK 262


>Z83216-7|CAB05676.2|  320|Caenorhabditis elegans Hypothetical
           protein C08F11.9 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 521 NLFSLISSFYRLYILLHIFHYS*YLL 444
           +L  LI S++ LYI++ +FH   +LL
Sbjct: 98  SLIFLIGSYFALYIIVQVFHLLIFLL 123


>Z79600-7|CAI79194.1|  173|Caenorhabditis elegans Hypothetical
           protein F59C6.12 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 95  FFQRNRLKPSKTSRWTPTYPYPSIC 21
           FF R ++K +KT R+  T+P+ S+C
Sbjct: 54  FFYR-KIKENKTGRYEDTFPWVSLC 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,776,696
Number of Sequences: 27780
Number of extensions: 213387
Number of successful extensions: 659
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)