Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identica...   100   1e-21
At2g23070.1 68415.m02750 casein kinase II alpha chain, putative ...    98   3e-21
At2g23080.2 68415.m02751 casein kinase II alpha chain, putative ...    97   8e-21
At2g23080.1 68415.m02752 casein kinase II alpha chain, putative ...    97   8e-21
At5g67380.1 68418.m08496 casein kinase II alpha chain 1 identica...    95   2e-20
At5g44290.1 68418.m05421 protein kinase family protein contains ...    30   1.1  
At5g43320.1 68418.m05294 casein kinase, putative similar to case...    29   1.9  
At4g24100.1 68417.m03460 protein kinase family protein contains ...    29   2.5  
At1g04440.1 68414.m00435 casein kinase, putative similar to case...    28   3.3  
At1g03740.1 68414.m00354 protein kinase family protein contains ...    28   4.4  
At3g19700.1 68416.m02495 leucine-rich repeat transmembrane prote...    27   5.8  
At3g01085.1 68416.m00012 protein kinase family protein contains ...    27   5.8  
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    27   5.8  
At1g18150.2 68414.m02253 mitogen-activated protein kinase, putat...    27   5.8  
At1g18150.1 68414.m02252 mitogen-activated protein kinase, putat...    27   5.8  
At5g57015.1 68418.m07116 casein kinase, putative similar to case...    27   7.7  
At4g14340.1 68417.m02208 casein kinase I (CKI1) identical to cas...    27   7.7  

>At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identical
           to casein kinase II, alpha chain 2 (CK II) [Arabidopsis
           thaliana] SWISS-PROT:Q08466
          Length = 403

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 44/70 (62%), Positives = 53/70 (75%)
 Frame = +2

Query: 257 TFGLQRHSTMAVPSRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEV 436
           T  L + S   V S+ARVY DVN  RP++YWDYES  V WG Q+DY++VRK+GRGKYSEV
Sbjct: 59  TDSLAKISLSTVMSKARVYTDVNVIRPKDYWDYESLNVQWGEQDDYEVVRKVGRGKYSEV 118

Query: 437 FEAINITNNE 466
           FE IN+ NNE
Sbjct: 119 FEGINMNNNE 128


>At2g23070.1 68415.m02750 casein kinase II alpha chain, putative
           similar to casein kinase II, alpha chain (CK II) [Zea
           mays] SWISS-PROT:P28523; contains protein kinase domain,
           Pfam:PF00069
          Length = 432

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 41/58 (70%), Positives = 50/58 (86%)
 Frame = +2

Query: 293 PSRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 466
           PS+ARVYADVN  RP++YWDYES  V WG Q+DY++VRK+GRGKYSEVFE I+ T+NE
Sbjct: 99  PSKARVYADVNVVRPKDYWDYESLAVQWGVQDDYEVVRKVGRGKYSEVFEGIHATDNE 156


>At2g23080.2 68415.m02751 casein kinase II alpha chain, putative
           identical to probable casein kinase II, alpha chain
           [Arabidopsis thaliana] SWISS-PROT:O64817; similar to
           casein kinase II, alpha chain 1 [Arabidopsis thaliana]
           SWISS-PROT:Q08467
          Length = 307

 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 40/57 (70%), Positives = 48/57 (84%)
 Frame = +2

Query: 296 SRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 466
           S+ARVY DVN  RP+EYWDYES VV WG+Q+DY++VRK+GRGKYSEVFE  N+  NE
Sbjct: 2   SKARVYTDVNVVRPKEYWDYESLVVQWGHQDDYEVVRKVGRGKYSEVFEGKNVNTNE 58


>At2g23080.1 68415.m02752 casein kinase II alpha chain, putative
           identical to probable casein kinase II, alpha chain
           [Arabidopsis thaliana] SWISS-PROT:O64817; similar to
           casein kinase II, alpha chain 1 [Arabidopsis thaliana]
           SWISS-PROT:Q08467
          Length = 333

 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 40/57 (70%), Positives = 48/57 (84%)
 Frame = +2

Query: 296 SRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 466
           S+ARVY DVN  RP+EYWDYES VV WG+Q+DY++VRK+GRGKYSEVFE  N+  NE
Sbjct: 2   SKARVYTDVNVVRPKEYWDYESLVVQWGHQDDYEVVRKVGRGKYSEVFEGKNVNTNE 58


>At5g67380.1 68418.m08496 casein kinase II alpha chain 1 identical
           to casein kinase II, alpha chain 1 (CK II) [Arabidopsis
           thaliana] SWISS-PROT:Q08467; contains protein kinase
           domain, Pfam:PF00069
          Length = 409

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 44/82 (53%), Positives = 60/82 (73%), Gaps = 3/82 (3%)
 Frame = +2

Query: 230 ISGKTIADKTFGLQ---RHSTMAVPSRARVYADVNSQRPREYWDYESYVVDWGNQEDYQL 400
           +SG T  D  F ++    + T A+ S+ARVY +VN  RP++YWDYES +V WG Q+DY++
Sbjct: 54  VSGCTTIDPDFLVEISDSNQTRAM-SKARVYTEVNVIRPKDYWDYESLIVQWGEQDDYEV 112

Query: 401 VRKLGRGKYSEVFEAINITNNE 466
           VRK+GRGKYSEVFE IN+ + E
Sbjct: 113 VRKVGRGKYSEVFEGINVNSKE 134


>At5g44290.1 68418.m05421 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/25 (40%), Positives = 20/25 (80%)
 Frame = +2

Query: 392 YQLVRKLGRGKYSEVFEAINITNNE 466
           ++ + K+G+G YS V++A ++TNN+
Sbjct: 137 FEKLEKIGQGTYSSVYKARDLTNNK 161


>At5g43320.1 68418.m05294 casein kinase, putative similar to casein
           kinase I (CKI2) [Arabidopsis thaliana]
           gi|1103322|emb|CAA55397; contains protein kinase domain,
           Pfam:PF00069
          Length = 480

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 392 YQLVRKLGRGKYSEVFEAINITNNE 466
           Y+L RKLG G + E+F  +N+   E
Sbjct: 9   YKLGRKLGSGSFGELFLGVNVQTGE 33


>At4g24100.1 68417.m03460 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 709

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 380 NQEDYQLVRKLGRGKYSEVFEAINITNNE 466
           N +DY+L+ ++G G  + V+ AI +  NE
Sbjct: 29  NPKDYKLMEEIGHGASAVVYRAIYLPTNE 57


>At1g04440.1 68414.m00435 casein kinase, putative similar to casein
           kinase I [Arabidopsis thaliana] gi|1103318|emb|CAA55395;
           contains protein kinase domain, Pfam:PF00069
          Length = 468

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 392 YQLVRKLGRGKYSEVFEAINITNNE 466
           ++L RKLG G + E+F  +N+   E
Sbjct: 9   FKLGRKLGSGSFGEIFLGVNVQTGE 33


>At1g03740.1 68414.m00354 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 542

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 365 VVDWGNQE--DYQLVRKLGRGKYSEVFEAINITNNE 466
           +VDW  +    ++ + K+G+G YS V+ A ++ +N+
Sbjct: 202 LVDWAPRRANTFEKLEKIGQGTYSSVYRARDLLHNK 237


>At3g19700.1 68416.m02495 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich receptor-like
           protein kinase GB:AAC36318 from [Malus domestica];
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 991

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 179 SRNNHSNVLVTLLKTYAISGKTIADKTFGLQRHSTMA 289
           SR+NHS  +  LLK  +  G+T +D  F    H   A
Sbjct: 19  SRSNHSEEVENLLKLKSTFGETKSDDVFKTWTHRNSA 55


>At3g01085.1 68416.m00012 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; contains
           non-consensus splice site (GC) at intron 2
          Length = 629

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 386 EDYQLVRKLGRGKYSEVFEAINIT 457
           ED++   K+G+G YS VF A  ++
Sbjct: 113 EDFEKREKIGQGTYSNVFRACEVS 136


>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 70  PAKLQDGRPPIPIHPSA 20
           PA+  D RPP+P++P A
Sbjct: 573 PARSYDRRPPVPLYPKA 589


>At1g18150.2 68414.m02253 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK8) identical to ATMPK8 [Arabidopsis
           thaliana] gi|7106542|dbj|BAA92222; mitogen-activated
           protein kinase (MAPK), PMID:12119167; similar to
           mitogen-activated protein kinase GI:5815410 from (Oryza
           sativa)
          Length = 589

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/80 (22%), Positives = 35/80 (43%)
 Frame = +2

Query: 227 AISGKTIADKTFGLQRHSTMAVPSRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVR 406
           A SG+ I ++       + + VP R  +  D + +   E++       ++G    YQ+  
Sbjct: 55  ANSGELIIEEDLDFSGLTLINVPKRNHLPMDPHKKGETEFF------TEYGEANRYQIQE 108

Query: 407 KLGRGKYSEVFEAINITNNE 466
            +G+G Y  V  A++    E
Sbjct: 109 VVGKGSYGVVASAVDSHTGE 128


>At1g18150.1 68414.m02252 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK8) identical to ATMPK8 [Arabidopsis
           thaliana] gi|7106542|dbj|BAA92222; mitogen-activated
           protein kinase (MAPK), PMID:12119167; similar to
           mitogen-activated protein kinase GI:5815410 from (Oryza
           sativa)
          Length = 589

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/80 (22%), Positives = 35/80 (43%)
 Frame = +2

Query: 227 AISGKTIADKTFGLQRHSTMAVPSRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVR 406
           A SG+ I ++       + + VP R  +  D + +   E++       ++G    YQ+  
Sbjct: 55  ANSGELIIEEDLDFSGLTLINVPKRNHLPMDPHKKGETEFF------TEYGEANRYQIQE 108

Query: 407 KLGRGKYSEVFEAINITNNE 466
            +G+G Y  V  A++    E
Sbjct: 109 VVGKGSYGVVASAVDSHTGE 128


>At5g57015.1 68418.m07116 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158; contains protein kinase domain,
           Pfam:PF00069
          Length = 435

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 392 YQLVRKLGRGKYSEVFEAINITNNE 466
           Y+L RK+G G + E++   +I  NE
Sbjct: 9   YRLGRKIGSGSFGEIYLGTHIQTNE 33


>At4g14340.1 68417.m02208 casein kinase I (CKI1) identical to casein
           kinase I [Arabidopsis thaliana] gi|1103318|emb|CAA55395
          Length = 457

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 392 YQLVRKLGRGKYSEVFEAINITNNE 466
           ++L RKLG G + E++  INI   E
Sbjct: 15  FKLGRKLGSGSFGELYLGINIQTGE 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,005,840
Number of Sequences: 28952
Number of extensions: 192279
Number of successful extensions: 596
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)