Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   3.9  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   3.9  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    25   5.2  
SPBC4C3.04c |||guanyl-nucleotide exchange factor |Schizosaccharo...    25   9.0  

>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +2

Query: 59  CSGQSVYNKKYCCPY*IKLFNK*HWYYVRINSNNPLAYSANSLGAMYYKSCTLK*NVNDL 238
           C+    YN+K+CC Y   +    H  Y      N L +  +S  A  +K  T K ++N L
Sbjct: 130 CTSHWYYNEKFCCWYSETMGMFKHDLY------NDLTFQGSSCTA--WKPWTYKFSLNYL 181

Query: 239 IWIVF 253
           I+  F
Sbjct: 182 IYTAF 186


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 349 TSISFKYIHILCMCHHASTHFEVVPAKILIM*K 251
           T  + KYI +LC+   A+TH  +V A++ I+ K
Sbjct: 302 TDQNLKYIALLCLRKLANTHPSLVSAQLDIILK 334


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 252 NTIQIKSLTFYFNVHDL*YIAPSEFALYA 166
           N  ++K LT YF  ++  Y+AP+ + L A
Sbjct: 98  NENEVKPLTVYFVCNENIYMAPNAYTLLA 126


>SPBC4C3.04c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 100

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 266 FDNVEIQSRLNR*HFILMCMTCNTSPL 186
           FDNV +   L   + +L C  C   PL
Sbjct: 55  FDNVSVSKPLANNYKLLACADCEKGPL 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,517
Number of Sequences: 5004
Number of extensions: 44040
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)