Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632...    30   1.3  
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893...    28   4.0  
03_01_0502 - 3779551-3779562,3779863-3780012,3780129-3780172,378...    28   5.2  
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    27   9.1  
06_01_0614 + 4448129-4448157,4448733-4449231,4449512-4449550,444...    27   9.1  

>09_02_0253 -
           6319198-6319240,6319364-6319552,6319650-6319995,
           6320811-6320893,6320977-6321074,6321384-6321461,
           6321891-6322000,6322083-6322180,6323199-6323296,
           6323403-6323463,6323688-6323831,6324103-6324206,
           6324634-6324787,6324860-6324879,6324967-6325029,
           6326521-6326632,6326711-6326796,6326872-6326899,
           6327242-6327293,6329034-6329250
          Length = 727

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 252 FYIIKIFAGTTSKCVLAW*HI--HNICIYLKLMLVLCWLLQYRVFYTL 389
           FY+  +FA     C+L+  H+    +CI +  +L+ C+ + Y ++Y +
Sbjct: 260 FYMETLFAKHERLCMLSIDHVKLQYLCITIYHLLIACFTVNYFIYYLI 307


>02_02_0322 -
           8938101-8938149,8938235-8938458,8938545-8938605,
           8938724-8940761,8940797-8940908,8942037-8942047,
           8942293-8942443
          Length = 881

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 175 CKFTRGDVLQVMHIKIKC*RFNLDCISTLSKFSRAQLQNVYLR 303
           C  T  D LQ+++ +I C +F+L     L  F  A L  +Y++
Sbjct: 45  CGATLQDYLQIVY-RISCIKFSLSFKGFLKSFQSAYLVKIYIK 86


>03_01_0502 -
           3779551-3779562,3779863-3780012,3780129-3780172,
           3780256-3780319,3780422-3780655,3780765-3780908,
           3781027-3781221,3781447-3781522,3781689-3781788,
           3781955-3781988,3782076-3782160,3782226-3782290,
           3782380-3782478,3782810-3782875,3785485-3785721
          Length = 534

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 252 FYIIKIFAGTTSKCVLAW*HIHNICIYLKLMLVLCWLLQYRVFYTLNLLRLSSRGG 419
           F+ +K F GT  K + A   I  +C+ L   L +   + Y V + +     ++RGG
Sbjct: 409 FWSLKDFHGTVQKAITADKSIKAVCLVLFAFLGVPLAVLYSVPFAVTAQLAATRGG 464


>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 387 MCKKLCIEVTNTKQASVLNIYIYCVCVTTQVHILK 283
           +C+K  IEV     ++++N+Y  C C+   VH+ +
Sbjct: 237 VCRK-GIEVEERLSSALINMYSKCGCIEGAVHVFE 270


>06_01_0614 +
           4448129-4448157,4448733-4449231,4449512-4449550,
           4449590-4449802,4449941-4450227,4450456-4450567,
           4451515-4451751,4451857-4451957,4452285-4452384,
           4452509-4453141
          Length = 749

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 246 LYFYIIKIFAGTTSKCV 296
           LYFY+ KI+ GT + C+
Sbjct: 84  LYFYVPKIYYGTPNSCI 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,940,489
Number of Sequences: 37544
Number of extensions: 248624
Number of successful extensions: 444
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)