Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r...    27   5.8  
At5g33410.1 68418.m03993 replication protein-related weak simila...    27   7.7  

>At3g54430.1 68416.m06021 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 183

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 474 KRRPVNCNTTHYRANWVPGPPSRTNAI-NLMCKKLCIEVTNTKQASVL 334
           K R  NC  TH ++ W+P   +R+++  +   KKL I+  ++   S+L
Sbjct: 62  KSRGYNC-VTHVKSTWIPSSATRSSSSPSERKKKLKIDKQSSPNVSLL 108


>At5g33410.1 68418.m03993 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 251

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 331 YIHILCMCHHASTHFEVVPAKILIM*KYN 245
           Y+ +LC+C H  T +  V   ILI  K N
Sbjct: 20  YVKVLCICDHPPTMYGDVTTMILIDDKCN 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,693,670
Number of Sequences: 28952
Number of extensions: 213992
Number of successful extensions: 402
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)