Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    32   0.045
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    27   1.3  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    27   1.7  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   3.9  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   6.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   6.8  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   9.0  
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    25   9.0  

>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +3

Query: 27  LPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRLL 176
           LP +++LL+  S  PL+ A V  +RN+++   N +P+ + G +  LV LL
Sbjct: 294 LPSLLRLLRS-SYLPLILASVACIRNISIHPLNESPIIDAGFLRPLVDLL 342


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 165 PDDERRHVPATERSWRSRAPGCVPSPRRPSLEASEKEAVAASLSPAIHNAGVL 7
           PD E+      ++S +  A    P  RR S  +S   +VAAS +P   +  VL
Sbjct: 191 PDAEQPAAAPVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPAVL 243


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 21/75 (28%), Positives = 30/75 (40%)
 Frame = +3

Query: 108 ALCSANYAPLREHGAVHHLVRLLMRAYXDTQRQRSSSGGGANTAYADGVRMEEIVEGAVG 287
           ALC  N     E  ++   +  + R +   Q     S    +TA  +  R+ EI+    G
Sbjct: 49  ALCQKNVISEEELNSILKGLEQIQREWNSGQFVLEPSDEDVHTA--NERRLTEIIGDVAG 106

Query: 288 ALHILAQRKPQQTTD 332
            LH    R  Q TTD
Sbjct: 107 KLHTGRSRNDQVTTD 121


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 56  SFSLASSEGRRGLGTQPGALLRQLRS 133
           SFSLASS     LG   G L +Q+ S
Sbjct: 229 SFSLASSASSTNLGGSKGLLFQQMTS 254


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 396 LNIFNLIXXQLHEYGNDILXSDQXSVVAFFGLKYAR 289
           +N+ +++   L EYGN I  + Q + + FF  KY++
Sbjct: 109 INVLSVLTSCLEEYGNQI--NQQETFIRFF-FKYSK 141


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 184 PTTTPRDNAALRAVEPIPLT 243
           P T P  N+A++  +P+P+T
Sbjct: 271 PVTLPAANSAVQNAQPVPMT 290


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 168 APDDERRHVPATERSWRSR 112
           A DDE   VP  + SWR R
Sbjct: 618 AADDEEEDVPDHQPSWRGR 636


>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 171 GAPDDERRHVPATERSWRSRAPGCVPSPRRPSLEAS 64
           G   D+   VP  E++W    PG  P    P +E S
Sbjct: 78  GISVDQSLQVPKFEKNWLISPPGSPPVGWEPIVEES 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,983
Number of Sequences: 5004
Number of extensions: 35537
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)