Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31372| Best HMM Match : Arm (HMM E-Value=0)                         44   8e-05
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)                 32   0.33 
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               30   1.0  
SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_602| Best HMM Match : TSP_1 (HMM E-Value=1e-27)                     29   2.3  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_24517| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06)                   28   4.1  
SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_8886| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)              27   7.1  
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)               27   9.4  
SB_12926| Best HMM Match : Arm (HMM E-Value=8.9e-05)                   27   9.4  

>SB_31372| Best HMM Match : Arm (HMM E-Value=0)
          Length = 656

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 4/167 (2%)
 Frame = +3

Query: 27  LPVIVKLLQPPSRWPLVKAVVGLVRNLALCSA-NYAPLREHGAVHHLVRLLMRA--YXDT 197
           L ++V+LL   +   +V    G++ NL   +  N   +   G +  LVR  ++A    + 
Sbjct: 388 LQMLVQLLSS-NDIQVVTCAAGILSNLTCNNPRNKQLVCRFGGIEALVRTCLQAGDREEI 446

Query: 198 QRQRSSSGGGANTAYADGVRMEEIVEGAVGALHILAQRKPQQTTDPTAECHS-HIRATXX 374
                      +    DGVRM++IVEG VGALHILA+    +    +  C S  ++    
Sbjct: 447 TEPADMQRRPGHNVVIDGVRMDDIVEGTVGALHILAREAHNRAVIRSLHCISLFVQLLYS 506

Query: 375 Q*D*KYSARCPPXCSVNWP*RKKGAEMIEXQRGNXLXSLXWLHSKNE 515
             +          C +     K+GAE IE +      +   LHS+NE
Sbjct: 507 PNENIQRVAAGVLCELAQD--KEGAEAIEAENATQPLT-DLLHSRNE 550



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +1

Query: 307 KESHNRXLIRXQNVIPIFVQLXXNEIENIQRVA 405
           +E+HNR +IR  + I +FVQL  +  ENIQRVA
Sbjct: 483 REAHNRAVIRSLHCISLFVQLLYSPNENIQRVA 515


>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1798

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 25/71 (35%), Positives = 42/71 (59%)
 Frame = +3

Query: 3    NAVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRLLMR 182
            +AVR   GLP++V+LL+  +  P+V+AV   +RNLA+   N   + ++ A+  LVR L  
Sbjct: 1502 SAVRKDKGLPILVELLRIDND-PVVRAVATCLRNLAIDPRNKDLIGKY-AMRDLVRRLPD 1559

Query: 183  AYXDTQRQRSS 215
               ++  +R S
Sbjct: 1560 PEKESDSERVS 1570


>SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)
          Length = 671

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 213 SCVVSGCRXRHAS-AGAPDDERRHVPATERSWRSRAPGCVPSPRRPSLEASEKEA 52
           +C+VSGC  +H S    P  +   +P  E+S  SRA    P P  P+L A+   A
Sbjct: 169 ACLVSGCSEKHHSLLHPPPGQASQLPLQEQSSGSRAEEASPPP-PPALVATGPSA 222


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 213 SCVVSGCRXRHASAGAPDDER-RHVPATERSWRSRAPGCVPSP 88
           +C+VSGC  +H S   P   R   +P  E+S  SRA    P P
Sbjct: 800 ACLVSGCSEKHHSLLHPPPGRASQLPLQEQSSGSRAEEASPPP 842


>SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 17  ALWIAGDSEAATASFSLASSEGRRGLGTQPGALLRQLRSVAGTWRRSSSGAPADA 181
           ALWI G+   +         E R+GLG  P  +  ++R  AG    +   APA +
Sbjct: 159 ALWILGEYADSKEDIMTVMEEIRKGLGDMP-IVDDEMRKAAGDQGEAGEEAPASS 212


>SB_602| Best HMM Match : TSP_1 (HMM E-Value=1e-27)
          Length = 590

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +3

Query: 69  PLVKAVVGLVRNLALCSANYAPLR-----EHGAVHHLVRL 173
           P++  +VG   N    S N+ P R     +HGA+ HLV++
Sbjct: 101 PVLPCLVGWASNHVFASVNHLPARVKTTKKHGAIRHLVQV 140


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +3

Query: 246  DGVRMEEIVEGAVGALHILA 305
            DG+R ++IV+ AVGALH LA
Sbjct: 1727 DGLRGKKIVDVAVGALHCLA 1746


>SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +3

Query: 69  PLVKAVVGLVRNLALCSANYAPLR-----EHGAVHHLVRL 173
           P++  +VG   N    S N+ P R     +HGA+ HLV++
Sbjct: 250 PVLPCLVGGASNHVFASVNHLPARVKTTKKHGAIRHLVQV 289


>SB_24517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 159 DERRHVPATERSWRSRAPGCVPSPRRPSLE 70
           +ER H  A ER+      G V  P+RP LE
Sbjct: 171 EEREHQAARERAKEKSGRGLVELPKRPRLE 200


>SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06)
          Length = 841

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 24  GLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAP-LREHGAVHHLVRLL 176
           GL  I++++  P      +A++ +    +   A + P LRE G +H L++L+
Sbjct: 522 GLSSIIEVISSPKNVVQNEALIAMTVMASTVKAEFYPKLRETGLMHQLIKLI 573


>SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 24  GLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRL 173
           GL +IV LL+   +  ++ +V   + N+A    N A + +HG V  L +L
Sbjct: 584 GLELIVSLLKSNDQ-EVLASVCAAIANIAKDEENLAVITDHGVVPMLAKL 632


>SB_8886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 167 HQMMNGAMFPQRSVVGGAERQVAYQAHDG 81
           HQ    A+ PQ S+  G  R+VA    DG
Sbjct: 45  HQTPTTALSPQASMASGGHRRVAQNPRDG 73


>SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
          Length = 641

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 317 WLSLG*NMQGSNGAFHDLLHTNA--VGVSGIGSTARRAALSLGVV 189
           W ++  +    NG FH L+HTN      + IG    R +  +GV+
Sbjct: 491 WFTIVASRNLHNGMFHSLIHTNMHFFDNNSIGRILNRFSKDIGVI 535


>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -3

Query: 207 VVSGCRXRHASAGAPDDERRHVPATERSWRSRAPGCVPSPRRPSLEASEKEAVAASLSPA 28
           ++SG R R  S  +  D      +T R  +SRA G  P P+ P+  A+   + AA   P 
Sbjct: 233 ILSG-RERKRSTSSSSDTSDTTASTPR--KSRANGVAPIPKSPNGAATSNSSSAA---PC 286

Query: 27  IHN 19
           I N
Sbjct: 287 IKN 289


>SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)
          Length = 440

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 21  YGLPVIVKLLQPPSRWPLVK 80
           + L  +V+LL  P RWP VK
Sbjct: 237 FTLEYLVRLLSAPERWPFVK 256


>SB_12926| Best HMM Match : Arm (HMM E-Value=8.9e-05)
          Length = 166

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +3

Query: 6   AVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRLLMRA 185
           A+R    +P++  LL    +  L    VG+++  +  +     LR+HG +  +V+LL+  
Sbjct: 94  AIRTAGTVPILASLLTS-GKHDLQLPAVGIIQECSNDTIFRGELRKHGMIQEIVQLLIDG 152

Query: 186 YXD 194
             D
Sbjct: 153 SED 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,785,836
Number of Sequences: 59808
Number of extensions: 315759
Number of successful extensions: 4109
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4107
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)