Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   5.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   5.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   5.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 135 LREHGAVHHLVR 170
           LRE G +HHL R
Sbjct: 364 LREEGWIHHLAR 375



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 14  PALWIAGDSEA 46
           P +W+ G+SEA
Sbjct: 225 PPVWVGGESEA 235


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 230 GSTARRAALSLGVVVGTHQQAHQMMN 153
           G   RRA+L  G+   T   AHQ +N
Sbjct: 228 GINGRRASLFCGLQKYTRSFAHQSIN 253


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 230 GSTARRAALSLGVVVGTHQQAHQMMN 153
           G   RRA+L  G+   T   AHQ +N
Sbjct: 223 GINGRRASLFCGLQKYTRSFAHQSIN 248


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 94  WYATWRSAPPTTLR 135
           W+  WR + PT +R
Sbjct: 31  WFEIWRDSLPTKMR 44


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 150 RHVPATERSWRSRAPGCVPSPRRPSLEASEKEA 52
           R  PA +R    ++P C P+PR  +  + + E+
Sbjct: 196 RITPAKKRIKLEQSPLCPPAPRLTNSNSIKHES 228


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 227 STARRAALSLGVVVG 183
           S  RRAA +LGV++G
Sbjct: 320 SKERRAARTLGVIMG 334


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 227 STARRAALSLGVVVG 183
           S  RRAA +LGV++G
Sbjct: 320 SKERRAARTLGVIMG 334


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 227 STARRAALSLGVVVG 183
           S  RRAA +LGV++G
Sbjct: 320 SKERRAARTLGVIMG 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,913
Number of Sequences: 438
Number of extensions: 2526
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)