BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308G05f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi... 29 1.9 At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 29 2.5 At3g46510.1 68416.m05049 armadillo/beta-catenin repeat family pr... 28 4.4 At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibit... 28 4.4 At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr... 28 4.4 At2g05810.2 68415.m00627 armadillo/beta-catenin repeat family pr... 28 4.4 At2g05810.1 68415.m00626 armadillo/beta-catenin repeat family pr... 28 4.4 At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi... 27 5.8 At1g27050.1 68414.m03298 homeobox-leucine zipper family protein ... 27 7.7 >At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 633 Score = 29.1 bits (62), Expect = 1.9 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +1 Query: 205 NAALRAVEPIPLTPTAFVWR 264 N ALR +E +P+ PTA +W+ Sbjct: 415 NRALRFIEEMPIEPTAAIWK 434 >At1g44120.1 68414.m05096 C2 domain-containing protein / armadillo/beta-catenin repeat family protein similar to CCLS 65 [Silene latifolia] GI:2570102; contains Pfam profiles PF00514: Armadillo/beta-catenin-like repeat, PF00168: C2 domain Length = 2114 Score = 28.7 bits (61), Expect = 2.5 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = +3 Query: 24 GLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRLL 176 G+ +I+KLLQ + A L R + + +++ + + E GAV LV+LL Sbjct: 191 GVDIILKLLQSSNPVSQSNAASLLARLIRIFTSSISKVEESGAVQVLVQLL 241 >At3g46510.1 68416.m05049 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain Length = 660 Score = 27.9 bits (59), Expect = 4.4 Identities = 15/64 (23%), Positives = 33/64 (51%) Frame = +3 Query: 27 LPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRLLMRAYXDTQRQ 206 +P++V LL P +V L+ NL++C N + GA+ +V++L + + + Sbjct: 396 IPLLVGLLSTPDSRIQEHSVTALL-NLSICENNKGAIVSAGAIPGIVQVLKKGSMEAREN 454 Query: 207 RSSS 218 +++ Sbjct: 455 AAAT 458 >At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibitor family protein similar to extensin-like protein [Zea mays] GI:5917666 Length = 264 Score = 27.9 bits (59), Expect = 4.4 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +3 Query: 45 LLQPPSRWPLVKAVVGLVRNLALCSANYAPL 137 LL PP P +K + G N LC ++ +PL Sbjct: 120 LLNPPLLSPEIKTICGKTDNPPLCESSVSPL 150 >At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family protein / F-box family protein contains similarity to F-box protein FBL2 GI:6010699 from [Rattus norvegicus]; contains Pfam profiles PF00514: Armadillo/beta-catenin-like repeat, PF00646: F-box domain Length = 930 Score = 27.9 bits (59), Expect = 4.4 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 5/107 (4%) Frame = +3 Query: 3 NAVRLHYGLPVIVKLLQPPSRWP-----LVKAVVGLVRNLALCSANYAPLREHGAVHHLV 167 NA+ G+ +V L+ RWP +++ G + NLA + + G VH LV Sbjct: 514 NAIAQAGGVKALVDLI---FRWPNGCDGVLERAAGALANLAADDKCSMEVAKAGGVHALV 570 Query: 168 RLLMRAYXDTQRQRSSSGGGANTAYADGVRMEEIVEGAVGALHILAQ 308 L + +++++ A+ D V GAL L Q Sbjct: 571 MLARNCKYEGVQEQAARALANLAAHGDSNNNNAAVGQEAGALEALVQ 617 >At2g05810.2 68415.m00627 armadillo/beta-catenin repeat family protein weak similarity to CCLS 65 [Silene latifolia] GI:2570102; contains Pfam profile PF00514: Armadillo/beta-catenin-like repeat Length = 580 Score = 27.9 bits (59), Expect = 4.4 Identities = 22/113 (19%), Positives = 49/113 (43%) Frame = +3 Query: 6 AVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRLLMRA 185 A+ + G+ V+++ + S+ + + + G + N+A L E GA+ L++LL+ Sbjct: 280 AISAYGGVTVLIEACRSGSK-QVQEHIAGAISNIAAVEEIRTTLAEEGAIPVLIQLLISG 338 Query: 186 YXDTQRQRSSSGGGANTAYADGVRMEEIVEGAVGALHILAQRKPQQTTDPTAE 344 Q + ++ + + G +++ G L IL + + T E Sbjct: 339 SSSVQEKTANF---ISLISSSGEYYRDLIVRERGGLQILIHLVQESSNPDTIE 388 >At2g05810.1 68415.m00626 armadillo/beta-catenin repeat family protein weak similarity to CCLS 65 [Silene latifolia] GI:2570102; contains Pfam profile PF00514: Armadillo/beta-catenin-like repeat Length = 580 Score = 27.9 bits (59), Expect = 4.4 Identities = 22/113 (19%), Positives = 49/113 (43%) Frame = +3 Query: 6 AVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRLLMRA 185 A+ + G+ V+++ + S+ + + + G + N+A L E GA+ L++LL+ Sbjct: 280 AISAYGGVTVLIEACRSGSK-QVQEHIAGAISNIAAVEEIRTTLAEEGAIPVLIQLLISG 338 Query: 186 YXDTQRQRSSSGGGANTAYADGVRMEEIVEGAVGALHILAQRKPQQTTDPTAE 344 Q + ++ + + G +++ G L IL + + T E Sbjct: 339 SSSVQEKTANF---ISLISSSGEYYRDLIVRERGGLQILIHLVQESSNPDTIE 388 >At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 850 Score = 27.5 bits (58), Expect = 5.8 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 199 RDNAALRAVEPIPLTPTAFVW 261 R NAALR +E +P+ P VW Sbjct: 630 RLNAALRLIEEMPMEPPPVVW 650 >At1g27050.1 68414.m03298 homeobox-leucine zipper family protein contains Pfam profile:PF00046 Homeobox domain and Pfam profile:PF00076 RNA recognition motif Length = 444 Score = 27.1 bits (57), Expect = 7.7 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +3 Query: 132 PLREHGAVHHLVRLLMRAYXDTQRQRSSSGGGANTAYADGVRMEEIV 272 PLR+HG L ++ D + S GG ++ A V+ IV Sbjct: 392 PLRKHGRSSRLASAIVNPRSDNTKGISGDGGISSPATTSEVKQRNIV 438 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,979,714 Number of Sequences: 28952 Number of extensions: 210905 Number of successful extensions: 666 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 666 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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