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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi...    29   1.9  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    29   2.5  
At3g46510.1 68416.m05049 armadillo/beta-catenin repeat family pr...    28   4.4  
At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibit...    28   4.4  
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr...    28   4.4  
At2g05810.2 68415.m00627 armadillo/beta-catenin repeat family pr...    28   4.4  
At2g05810.1 68415.m00626 armadillo/beta-catenin repeat family pr...    28   4.4  
At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi...    27   5.8  
At1g27050.1 68414.m03298 homeobox-leucine zipper family protein ...    27   7.7  

>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 633

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 205 NAALRAVEPIPLTPTAFVWR 264
           N ALR +E +P+ PTA +W+
Sbjct: 415 NRALRFIEEMPIEPTAAIWK 434


>At1g44120.1 68414.m05096 C2 domain-containing protein /
           armadillo/beta-catenin repeat family protein similar to
           CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
           profiles PF00514: Armadillo/beta-catenin-like repeat,
           PF00168: C2 domain
          Length = 2114

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +3

Query: 24  GLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRLL 176
           G+ +I+KLLQ  +      A   L R + + +++ + + E GAV  LV+LL
Sbjct: 191 GVDIILKLLQSSNPVSQSNAASLLARLIRIFTSSISKVEESGAVQVLVQLL 241


>At3g46510.1 68416.m05049 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 660

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = +3

Query: 27  LPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRLLMRAYXDTQRQ 206
           +P++V LL  P       +V  L+ NL++C  N   +   GA+  +V++L +   + +  
Sbjct: 396 IPLLVGLLSTPDSRIQEHSVTALL-NLSICENNKGAIVSAGAIPGIVQVLKKGSMEAREN 454

Query: 207 RSSS 218
            +++
Sbjct: 455 AAAT 458


>At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibitor
           family protein similar to extensin-like protein [Zea
           mays] GI:5917666
          Length = 264

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 45  LLQPPSRWPLVKAVVGLVRNLALCSANYAPL 137
           LL PP   P +K + G   N  LC ++ +PL
Sbjct: 120 LLNPPLLSPEIKTICGKTDNPPLCESSVSPL 150


>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
           protein / F-box family protein contains similarity to
           F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
           contains Pfam profiles PF00514:
           Armadillo/beta-catenin-like repeat, PF00646: F-box
           domain
          Length = 930

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
 Frame = +3

Query: 3   NAVRLHYGLPVIVKLLQPPSRWP-----LVKAVVGLVRNLALCSANYAPLREHGAVHHLV 167
           NA+    G+  +V L+    RWP     +++   G + NLA        + + G VH LV
Sbjct: 514 NAIAQAGGVKALVDLI---FRWPNGCDGVLERAAGALANLAADDKCSMEVAKAGGVHALV 570

Query: 168 RLLMRAYXDTQRQRSSSGGGANTAYADGVRMEEIVEGAVGALHILAQ 308
            L      +  +++++       A+ D       V    GAL  L Q
Sbjct: 571 MLARNCKYEGVQEQAARALANLAAHGDSNNNNAAVGQEAGALEALVQ 617


>At2g05810.2 68415.m00627 armadillo/beta-catenin repeat family
           protein weak similarity to CCLS 65 [Silene latifolia]
           GI:2570102; contains Pfam profile PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 580

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 22/113 (19%), Positives = 49/113 (43%)
 Frame = +3

Query: 6   AVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRLLMRA 185
           A+  + G+ V+++  +  S+  + + + G + N+A        L E GA+  L++LL+  
Sbjct: 280 AISAYGGVTVLIEACRSGSK-QVQEHIAGAISNIAAVEEIRTTLAEEGAIPVLIQLLISG 338

Query: 186 YXDTQRQRSSSGGGANTAYADGVRMEEIVEGAVGALHILAQRKPQQTTDPTAE 344
               Q + ++     +   + G    +++    G L IL     + +   T E
Sbjct: 339 SSSVQEKTANF---ISLISSSGEYYRDLIVRERGGLQILIHLVQESSNPDTIE 388


>At2g05810.1 68415.m00626 armadillo/beta-catenin repeat family
           protein weak similarity to CCLS 65 [Silene latifolia]
           GI:2570102; contains Pfam profile PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 580

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 22/113 (19%), Positives = 49/113 (43%)
 Frame = +3

Query: 6   AVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRLLMRA 185
           A+  + G+ V+++  +  S+  + + + G + N+A        L E GA+  L++LL+  
Sbjct: 280 AISAYGGVTVLIEACRSGSK-QVQEHIAGAISNIAAVEEIRTTLAEEGAIPVLIQLLISG 338

Query: 186 YXDTQRQRSSSGGGANTAYADGVRMEEIVEGAVGALHILAQRKPQQTTDPTAE 344
               Q + ++     +   + G    +++    G L IL     + +   T E
Sbjct: 339 SSSVQEKTANF---ISLISSSGEYYRDLIVRERGGLQILIHLVQESSNPDTIE 388


>At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 850

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 199 RDNAALRAVEPIPLTPTAFVW 261
           R NAALR +E +P+ P   VW
Sbjct: 630 RLNAALRLIEEMPMEPPPVVW 650


>At1g27050.1 68414.m03298 homeobox-leucine zipper family protein
           contains Pfam profile:PF00046 Homeobox domain and Pfam
           profile:PF00076 RNA recognition motif
          Length = 444

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 132 PLREHGAVHHLVRLLMRAYXDTQRQRSSSGGGANTAYADGVRMEEIV 272
           PLR+HG    L   ++    D  +  S  GG ++ A    V+   IV
Sbjct: 392 PLRKHGRSSRLASAIVNPRSDNTKGISGDGGISSPATTSEVKQRNIV 438


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,979,714
Number of Sequences: 28952
Number of extensions: 210905
Number of successful extensions: 666
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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