Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G04f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    29   0.033
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   0.71 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    24   0.94 
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   1.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   3.8  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   3.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   3.8  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 0.033
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
 Frame = +2

Query: 209 WLSETEADLHRKIAHFPELIS--KSKCETNHMCLICMRPQESKDSLLKHTKTDHLLSSPT 382
           W S  E     + +   +L+   + K    + C+IC R    K +L  H +T H    P 
Sbjct: 105 WESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRT-HTGERP- 162

Query: 383 ARKVEREIFVCDHCNGVFFNKFMLTAHFYFKHIKDQTRGI-QCVICN 520
                   F C  C   F  K  L  H      K   R + QC +C+
Sbjct: 163 --------FKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCH 201


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 356 FSCVSTDCPYFLEVACRSST 297
           +SC ST+CP FL +   S T
Sbjct: 258 WSCTSTNCPRFLIMLALSYT 277


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 163 RLLHRWRSHKIRMSTEHDCFFKALFIIQIV 74
           ++ +R    K  + T H+C  K L + QIV
Sbjct: 9   KIRNRGTPPKFELPTTHNCLKKVLLLSQIV 38


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +2

Query: 407 FVCDHCNGVFFNKFMLTAHFYFKHIKDQTRGIQCVIC 517
           F+C +CN  F   + L  H   +      R   C IC
Sbjct: 80  FICKYCNRQFTKSYNLLIH---ERTHTDERPYSCDIC 113


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +2

Query: 314 RPQESKDSLLKHTKTDHLLSSPTARKVEREIFVCDHCNGVFFNKFMLTAH 463
           RP   +   +K + ++ L +       E+  F CD C G F  +  L  H
Sbjct: 217 RPYGCEHCSMKFSDSNQLKAHVLIHTNEKP-FECDKCRGRFRRRHHLVHH 265


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 404 IFVCDHCNGVFFNKFMLTAHFYFKHIKDQ 490
           IF CD C G FF + +     Y    KD+
Sbjct: 52  IFACDGCAG-FFKRSIRRNRQYVCKAKDE 79


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 404 IFVCDHCNGVFFNKFMLTAHFYFKHIKDQ 490
           IF CD C G FF + +     Y    KD+
Sbjct: 52  IFACDGCAG-FFKRSIRRNRQYVCKAKDE 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,341
Number of Sequences: 336
Number of extensions: 2758
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)