Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.079
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   2.2  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    25   6.8  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   6.8  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   9.0  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   9.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   9.0  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   9.0  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 407 FVCDHCNGVFFNKFMLTAHFYFKHIKDQTRGIQ 505
           F+C HC+  F    +L  H   KH+K    G Q
Sbjct: 47  FICPHCSSSFTRSDVLNRHVNQKHVKQNDAGSQ 79


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 264 NSGKCAIFLCKSASVSDSQHALHRSHLKTSESQLA 160
           + G C ++   S    D+Q  L  ++LK SE Q++
Sbjct: 123 SEGSCDVYFETSQDAEDAQKTLQSTNLKGSEIQIS 157


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 359 QFSCVSTDCPYFLEVACRSSTYDSFRISILKLIQGNVRSF 240
           +F+C S+ C Y   V C +S Y +    ++ L   +  SF
Sbjct: 331 RFNCSSSGCDYATNVTCPNS-YTAVSYEMMALTDDSYLSF 369


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 395 RLSLQSVRIID-DQFSCVSTDCPYFLEVACRSSTYDSFRISILKLIQGNVRSFCASQLLF 219
           R +L+ V+ ID  Q + +  D P    +AC     DS  I  + L + +V     +  + 
Sbjct: 108 RETLKKVKTIDLYQCAAIDPDTPIEETMACLKEFVDSGDIRCIGLCEPSVEEIKRAHSVV 167

Query: 218 RIAS 207
           RIA+
Sbjct: 168 RIAA 171


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
 Frame = +3

Query: 195 CVKRAGYPKQKLTCTERSHISLN*----FQNRNAKRIICA*SACDLKKVRTVC*NTRK-- 356
           C K  G PK + T     H+ +      +Q+RN   +       D+K    +C  TR   
Sbjct: 136 CYKITGIPKSQ-TAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIK--HGICDRTRISC 192

Query: 357 LIIYYPHRLQGKSSAKYLYATIVTEYSSTNSC*LLISISNTLKIKLEA 500
           L+I   HR    S+  Y Y  +V   S +N    ++++S T   KLEA
Sbjct: 193 LVIDEAHR----STGNYAYVEVVHLLSLSNKNFRILALSATPGNKLEA 236


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 359 QFSCVSTDCPYFLEVACRSSTYDSFRISILKLIQGNVRSF 240
           +F+C S+ C Y   V C  S Y +    ++ L   +  SF
Sbjct: 411 RFNCSSSGCDYATNVTCPDS-YTAVSYEMMALTDDSYLSF 449


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 359 QFSCVSTDCPYFLEVACRSSTYDSFRISILKLIQGNVRSF 240
           +F+C S+ C Y   V C  S Y +    ++ L   +  SF
Sbjct: 331 RFNCSSSGCDYATNVTCPDS-YTAVSYEMMALTDDSYLSF 369


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -1

Query: 422 NGRIQI--FRARLSLQSVRIIDDQFSCVSTDCPYFLEVACRSSTYDSFRISILKLI 261
           NG +Q+   +A +SL    ++  +F  V  D    +E++C      +FRI +LKL+
Sbjct: 545 NGDLQLRSIQAIVSLTFYYVLLPEFKSVLYDG--LVEISCDFKIRRTFRIPVLKLL 598


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 299 CLICMRPQESKDSLLKHTKTDHLLSSP 379
           CL C     S D+  KH K  H L  P
Sbjct: 210 CLFCAASFSSFDTCKKHMKASHSLYIP 236


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 459  AVNMNLLKNTPLQWSHTNISRST 391
            A NM+L KN   Q  HT +S  T
Sbjct: 1128 AANMDLAKNVQTQIEHTTLSTVT 1150


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 182 FKCDLCKACWLSETEADLHRKIAHFPELISKSKCETNHMCLICMRPQ 322
           FK    K  WL++TE      +  F  LI+K K E        + PQ
Sbjct: 611 FKKTEKKVTWLADTEDKTPVDLVDFDYLITKDKLEEGENYKDFLTPQ 657


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 224 EADLHRKIAHFPELISKSKCETNHMCLICMRPQESKDSLLKHTK 355
           E + H  + HF   I +S  E      + + PQ+ +DS+L+ T+
Sbjct: 678 EKEFHSVVYHFIG-IQRSLYENYAQGFLFLIPQDMRDSILEETQ 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,546
Number of Sequences: 5004
Number of extensions: 45025
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)