Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089...    29   1.7  
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307...    29   3.0  
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242...    29   3.0  
01_06_1032 - 33950477-33950704,33951122-33951311,33952714-33953333     27   6.9  
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681...    27   9.1  

>12_02_0957 +
           24807261-24807311,24807436-24807773,24808727-24808927,
           24809024-24809069,24809284-24809600,24809949-24810072,
           24810465-24810537,24810968-24811173,24811384-24811651,
           24811780-24811877,24812116-24812379
          Length = 661

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +2

Query: 197 CKACWLSETEADLHRKIAHFPELISKSKCETNHMCLICMRPQESKDSLLKH 349
           CKA    +T  +LH+ +  + + ++ +K E + +CL  +   + K ++  H
Sbjct: 603 CKAALHIDTSTNLHKLLKGWGKFVNDNKLEIHDICLFQLMKNKKKLTMTVH 653


>11_06_0176 +
           20929629-20929791,20929918-20930333,20930449-20930736,
           20931034-20931147,20931245-20931352,20931701-20931744,
           20933106-20933200,20934103-20934182,20934278-20934391,
           20934476-20934628,20934740-20934832
          Length = 555

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 140 RTPPVQKASCDSEVFKCDLCKACWLSETEADLHRKIAH 253
           R   +  AS  +   KC+LC A +L +++ + HR+  H
Sbjct: 515 RYSTIAMASGKNAGTKCNLCNARFLKDSDLEFHRRYYH 552


>02_05_0473 +
           29319824-29322511,29322659-29322820,29324133-29324249,
           29324360-29324469,29324504-29324540,29324696-29324862,
           29325002-29325089,29325163-29325270
          Length = 1158

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
 Frame = +2

Query: 185 KCDLCKACWLSETEADLHRKIAHFPELISKSKCETNHMCLICMRPQESKDSLLKHTKTDH 364
           KC +C   +  +    LH    H  E+    +    + C +CM    ++  L +H +  H
Sbjct: 464 KCKICSQEFSDDQGLGLHWTEVHKKEVRWLFR---GYSCAVCMDSFTNRRVLERHVQEKH 520

Query: 365 LLSSPTARKVEREIFV-CDHCNGVFFNKFMLTAHFYFKHIKD 487
                 A+ ++    + C  CN  F N  +L  H    H +D
Sbjct: 521 -----GAQYLQYSTLLRCISCNSNFLNTDLLWQHIVSDHSRD 557


>01_06_1032 - 33950477-33950704,33951122-33951311,33952714-33953333
          Length = 345

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 101 KKTIMFRTHSDLVRTPPVQKASCDSEVFKCDLCKACWLSETEADLHRKI 247
           +K  M+R H +   T  V++ + D  V +  +    WL E E +  RK+
Sbjct: 142 EKQEMYRLHKEDPETYTVERLAKDFRVMRQRVHAILWLKEMEEEEERKL 190


>10_06_0131 -
           11066033-11066251,11066548-11067012,11067102-11068177,
           11068269-11068422,11068511-11068601,11069016-11069152
          Length = 713

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +2

Query: 200 KACWLSETEADLHRKIAHFPELISKSKCETNHMCLICMRPQESKDSL-LKHTKTDHLLSS 376
           K  WL + +  +   +  F  LISK K E +   L  + P   K++L L      +LL  
Sbjct: 615 KVTWLPDIDDLVPLSLVEFDYLISKKKLEEDENFLDNLNPCTRKETLALGDANMRNLLRG 674

Query: 377 PTARKVEREIFVCD 418
              +   +  + CD
Sbjct: 675 EVIQLERKGYYRCD 688


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,204,615
Number of Sequences: 37544
Number of extensions: 253755
Number of successful extensions: 647
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)