Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    29   0.022
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    26   0.27 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.7  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 29.5 bits (63), Expect = 0.022
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 398 REIFVCDHCNGVFFNKFMLTAHFYFKHIKDQTRGIQCVIC 517
           +++F C  C  V  +K  L  H   KH + Q    +CVIC
Sbjct: 3   KKLFTCQLCGKVLCSKASLKRHVADKHAERQEE-YRCVIC 41



 Score = 29.1 bits (62), Expect = 0.029
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +2

Query: 176 EVFKCDLCKACWLSETEADLHRKIAHFPELISKSKCETNHMCLICMRPQESKDSLLKHTK 355
           ++F C LC     S+  A L R +A        ++ +  + C+IC R   S++SL+ H  
Sbjct: 4   KLFTCQLCGKVLCSK--ASLKRHVAD-----KHAERQEEYRCVICERVYCSRNSLMTHIY 56

Query: 356 TDH 364
           T H
Sbjct: 57  TYH 59


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 251 HFPELISKSKCETNHMCLICMRPQESKDSLLKHTKTDHLLSSPTARKV 394
           HF +   +S  +T ++C  C R   +K+SL  H    H  SS   +++
Sbjct: 24  HFQDKHEQS--DTLYVCEFCNRRYRTKNSLTTHKSLQHRGSSGMLKRL 69



 Score = 25.0 bits (52), Expect = 0.47
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 299 CLICMRPQESKDSLLKHTKTDHLLSSPTARKVEREIFVCDHCNGVFFNKFMLTAHFYFKH 478
           C  C R      SL +H +  H  S          ++VC+ CN  +  K  LT H   +H
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSDT--------LYVCEFCNRRYRTKNSLTTHKSLQH 59


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 155 QKASCDSEVFKCDLCKACWLSETEADLHRK 244
           Q A    +V+KC LC   + S+   +LH K
Sbjct: 251 QVAHYGEKVYKCTLCHETFGSKKTMELHIK 280


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 417 SHTNISRSTFLAVGEDNR*SVFVCFNRLSL 328
           ++T ++ +TF+ V E+N   VF C N LS+
Sbjct: 326 TNTELNPNTFILVAENNTTMVF-C-NDLSI 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,717
Number of Sequences: 438
Number of extensions: 3021
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)