Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308G04f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29830.1 68414.m03646 hypothetical protein 30 1.1
At4g26030.1 68417.m03748 hypothetical protein 28 3.3
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ... 28 3.3
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 28 3.3
At3g05675.2 68416.m00633 expressed protein 28 4.4
At3g05675.1 68416.m00632 expressed protein 28 4.4
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly... 28 4.4
At2g44380.1 68415.m05520 DC1 domain-containing protein highly si... 27 5.8
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 27 5.8
At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein ... 27 7.7
>At1g29830.1 68414.m03646 hypothetical protein
Length = 570
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 398 ARLSLQSVRIIDDQFSCVSTDCPYFLEVACRSSTYDSFRISILKLIQ 258
A L+ + R D + + D LE+AC S T+D I +L L++
Sbjct: 288 AHLACRLSRWDDSVVNSIDKDTRRSLEIACSSDTWDETNIKVLVLVR 334
>At4g26030.1 68417.m03748 hypothetical protein
Length = 220
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 407 FVCDHCNGVFFNKFMLTAHFYFKHIKDQTR 496
F+C CN +F ML H H K++T+
Sbjct: 158 FICLKCNSLFDTSQMLVVHTELIHSKNETK 187
>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 649
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -1
Query: 356 FSCVSTDCPYFLEVACRSST----YDSFRISILKLIQGNVRSFC 237
+ C DC Y L+V C S++ Y + + ++ NV+ C
Sbjct: 455 YECTFEDCDYILDVVCASASEPFNYQGHQHPLFLALRPNVKPMC 498
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 182 FKCDLCKACWLSETEADLHRKIAHFP-ELISKSKCETNHMCLICMRP 319
F CD+C + E LHR+ + P +L KS E +C P
Sbjct: 83 FICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEP 129
>At3g05675.2 68416.m00633 expressed protein
Length = 441
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 374 RIIDDQFSCVSTDCPYFLEVACRSSTYDSFRISILKLI 261
R+ D +C D Y +EV C+ S YD I++L+L+
Sbjct: 53 RLSDKWPTCKILDSRYCVEVICQESDYD-HHINLLRLL 89
>At3g05675.1 68416.m00632 expressed protein
Length = 441
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 374 RIIDDQFSCVSTDCPYFLEVACRSSTYDSFRISILKLI 261
R+ D +C D Y +EV C+ S YD I++L+L+
Sbjct: 53 RLSDKWPTCKILDSRYCVEVICQESDYD-HHINLLRLL 89
>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
identical to GI:9957293; contains Pfam profile: PF01397
terpene synthase family
Length = 591
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 113 MFRTHSDLVRTPPVQKASCDSEVFKCDLCKA--CWLSETEADLHRKIAHFPELISKSKCE 286
+FR +DLV +P E+ + D+CK+ C++SET A + +H ++I+ E
Sbjct: 479 VFRLANDLVTSP--------DELARGDVCKSIQCYMSETGASEDKARSHVRQMINDLWDE 530
Query: 287 TNH 295
N+
Sbjct: 531 MNY 533
>At2g44380.1 68415.m05520 DC1 domain-containing protein highly
similar to GP|2435515|AF024504; contains Pfam profile
PF03107: DC1 domain
Length = 247
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = -1
Query: 425 YNGRIQIFRAR------LSLQSVRIIDDQFSCVSTDCPYFLEVAC 309
+N +++F+AR S + + F C+ +DC YFL +C
Sbjct: 17 HNHPLRVFKARDEDEVVCSGCELELTGQAFKCMKSDCDYFLHKSC 61
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 182 FKCDLCKACWLSETEADLHRKIAHFP-ELISKSKCETNHMCLICMRP 319
F C++C + E LHR+ + P +L KS E +C P
Sbjct: 82 FLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVRRKVYLCPEP 128
>At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 272
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +2
Query: 128 SDLVRTPPVQKASCDSEVFKCDLCKACWLSETEADLHRKIAHFPEL-ISKSKC 283
+D+ R K D ++C CK + E D H H+ L S KC
Sbjct: 89 NDIYREQEEHKLRSDINEWRCGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKC 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,221,618
Number of Sequences: 28952
Number of extensions: 225076
Number of successful extensions: 661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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