Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G02f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4B067 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q73L50 Cluster: Lipoprotein, putative; n=1; Treponema d...    32   9.2  
UniRef50_A2F322 Cluster: Beige/BEACH domain containing protein; ...    32   9.2  
UniRef50_Q6LZD2 Cluster: Leucyl-tRNA synthetase; n=5; Methanococ...    32   9.2  

>UniRef50_A4B067 Cluster: Putative uncharacterized protein; n=1;
           Alteromonas macleodii 'Deep ecotype'|Rep: Putative
           uncharacterized protein - Alteromonas macleodii 'Deep
           ecotype'
          Length = 237

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 366 NLKNIVSGLNGAF*TIYDRFVHND---FIMFFYYLINDGKNCIKQKIYSYK 509
           ++KN+ SG   A   + D  ++ND    +M  YY  N GK+C+KQ +  YK
Sbjct: 173 DVKNLPSGFE-ALERLLDGHINNDDVVAVMRHYYAFN-GKDCVKQALNKYK 221


>UniRef50_Q73L50 Cluster: Lipoprotein, putative; n=1; Treponema
           denticola|Rep: Lipoprotein, putative - Treponema
           denticola
          Length = 373

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +3

Query: 309 SVIIFEDKQKKQLNVISSYNLKNIVSGLN-----GAF*TIYDRFVHNDFIMFFYYLINDG 473
           S I+F++ QKK + V  S      +  LN     G    IYD  + N+ I+F     N+ 
Sbjct: 149 SAILFDEDQKKIIEVEDSPYYDGKIVKLNEYNDLGLQTNIYDFRLDNEIILFSEEFYNEL 208

Query: 474 KNCIKQKIYSYK 509
           KN   + +YSY+
Sbjct: 209 KNIDDKLMYSYE 220


>UniRef50_A2F322 Cluster: Beige/BEACH domain containing protein; n=1;
            Trichomonas vaginalis G3|Rep: Beige/BEACH domain
            containing protein - Trichomonas vaginalis G3
          Length = 2460

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 411  IYDRFVHNDFIMFFYYLINDGKNCIKQKIYSYK 509
            I ++    DF++F Y+LI  G+N IK+ ++  K
Sbjct: 1362 ILEKMSKFDFVIFLYFLITKGRNLIKEFVFLVK 1394


>UniRef50_Q6LZD2 Cluster: Leucyl-tRNA synthetase; n=5;
           Methanococcus|Rep: Leucyl-tRNA synthetase -
           Methanococcus maripaludis
          Length = 955

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 315 IIFEDKQKKQLNVISSYNLKNIVSGLNGAF*TIYDRFVHNDFIMFFYYLIND 470
           ++ E+  +K+L++I  + L    S +N A  T Y+ F      + FY LIND
Sbjct: 708 VMEEESAEKELSLIDKWLLHKTYSSINSAE-TAYEEFQLRKIGLMFYELIND 758


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 335,359,066
Number of Sequences: 1657284
Number of extensions: 5365297
Number of successful extensions: 10511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10511
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)