Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.0  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    25   6.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.8  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 504  NYIFFVLCNFFRH*LNNKKT**NHYVRICHKLFRML 397
            NYIF  + NF  H LNN+    N   ++  KL++ L
Sbjct: 1274 NYIFISMTNFISH-LNNRLL--NRRTKVSKKLYKRL 1306


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 125 HLLVGRVKREIQLISTKLS 181
           HLLV R+K+E+ L+ T+ +
Sbjct: 596 HLLVNRIKQELDLLKTRFT 614


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 406 QNAPFSPLTIFLRLYDEMTFNCFFCLSSNIITELSQEPLLV 284
           +NAP S LTIF  +  ++ F     + +     +   PLL+
Sbjct: 80  ENAPVSRLTIFFAVSSQIVFAILVTILNKQALNIINAPLLM 120


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 339  KQLNVISSYNLKNIVSGLNGAF 404
            K++  +S YN+  +V+G++GA+
Sbjct: 1123 KKIQSVSGYNIDAMVAGVDGAY 1144


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +3

Query: 411 IYDRFVHNDFIMFFYYLINDGKNCIKQKIYSYKL 512
           +Y  F+H           ND K CI Q I S  L
Sbjct: 73  LYSTFIHTGIATIVSSSDNDNKICISQGILSVTL 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,015
Number of Sequences: 5004
Number of extensions: 26303
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)