Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G01f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q94547 Cluster: Regulator of gene activity; n=3; Sophop...    34   2.3  
UniRef50_A2RB58 Cluster: Contig An18c0170, complete genome; n=2;...    33   3.0  
UniRef50_Q8SXX2 Cluster: RH06639p; n=8; Endopterygota|Rep: RH066...    33   5.2  
UniRef50_Q22XL1 Cluster: TPR Domain containing protein; n=2; Tet...    32   9.2  

>UniRef50_Q94547 Cluster: Regulator of gene activity; n=3;
           Sophophora|Rep: Regulator of gene activity - Drosophila
           melanogaster (Fruit fly)
          Length = 585

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 339 LSPGRNSTAMPGGAPPSMASR-ATLFGQRAFADRR 440
           LSP RN+    GG   S  +R A LFGQR F +RR
Sbjct: 72  LSPNRNAQLSVGGPAISSGNRNANLFGQRQFVERR 106


>UniRef50_A2RB58 Cluster: Contig An18c0170, complete genome; n=2;
           Aspergillus|Rep: Contig An18c0170, complete genome -
           Aspergillus niger
          Length = 658

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 325 LLGAPCRLAV-IQLQCQAELPHQWHLELRCLVNELLQTEGLQCQQLYLKLILIQC 486
           LL A C +   ++++  +++P   H EL+  +N ++Q + L C +    L+++ C
Sbjct: 209 LLNAICTIGSRVEIRSGSQIPDLLHAELKRSINVVIQNKNLNCLESVQALLIVAC 263


>UniRef50_Q8SXX2 Cluster: RH06639p; n=8; Endopterygota|Rep: RH06639p
           - Drosophila melanogaster (Fruit fly)
          Length = 844

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 361 LQCQAELPHQWHLELRCLVNELLQTEGLQCQQLYLK 468
           L+C A +  QW+ E    VN+  QTE L  QQ Y++
Sbjct: 226 LECTANVAAQWNFETN--VNDFTQTEALNAQQRYVE 259


>UniRef50_Q22XL1 Cluster: TPR Domain containing protein; n=2;
           Tetrahymena thermophila SB210|Rep: TPR Domain containing
           protein - Tetrahymena thermophila SB210
          Length = 1281

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 91  YNKTQPKNILNITENEFESDIYYLPLVPNS 2
           +N TQ  N  +I  +EF S +YY PL+ +S
Sbjct: 661 FNSTQSSNAYSILIHEFNSTVYYHPLINSS 690


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 471,762,743
Number of Sequences: 1657284
Number of extensions: 8434031
Number of successful extensions: 22249
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22243
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)