Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    26   3.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.2  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   5.2  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 28  RCLTRTRFQLCLKYFLVGFYYNETVRSIHLF--TYRNH 135
           R L  +RF L  +   +G  Y     S+HLF  T+R+H
Sbjct: 10  RTLPNSRFLLLRRLQPLGLRYRSDASSLHLFTPTWRDH 47


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +3

Query: 321 PTFG----GALSPGRNSTAMPGGAPPSMASRATLFGQ 419
           P FG    G L   RN+T   GG    M+S   +FGQ
Sbjct: 57  PLFGSNTNGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 100 RSHYNKTQPKNILNITENEFESDIYYLP 17
           R++++  Q  N+L   E E  SDI+++P
Sbjct: 41  RNYWDVFQANNVLLFPEEESYSDIFHVP 68


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 349 AVIQLQCQAELPHQWHLELRCLVNELLQTEGLQCQQLYLKLILI 480
           A I L C   L  Q HL L+  +NE + ++   C++ +  L+++
Sbjct: 579 AAIGLACNMRLHIQSHLSLQS-INEDMDSDEALCRRAWWVLVVL 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,327
Number of Sequences: 5004
Number of extensions: 34827
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)