Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0990 + 7847066-7847478,7847713-7848679                           27   6.9  
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046...    27   9.1  

>01_01_0990 + 7847066-7847478,7847713-7848679
          Length = 459

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = -1

Query: 458 SCWHCNPSVCKSSLTKQRSSRCH*WGSSAWHCS*ITARRQGAPKSW 321
           SC H NPS     LT  +   C   G   W C    ++R      W
Sbjct: 72  SCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCD-KCSKRYAVQSDW 116


>01_06_0405 +
           29103723-29103839,29103928-29104012,29104572-29104674,
           29104798-29104882,29105414-29105497,29105627-29105730,
           29106522-29106783,29106978-29107414,29107637-29107718,
           29109913-29110089,29110640-29110732,29110812-29110877,
           29110992-29111038,29111165-29111430,29111443-29111845,
           29111992-29112376
          Length = 931

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 86  IIMRPSDPFICSPIGIIRKDE 148
           +++RPSDPF   PIG++ +++
Sbjct: 51  VVLRPSDPF---PIGVVNRED 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,995,555
Number of Sequences: 37544
Number of extensions: 243079
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)