BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308G01f (521 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z69744-1|CAA93625.1| 4005|Homo sapiens ALL-1 protein protein. 30 5.7 BC080195-1|AAH80195.1| 881|Homo sapiens Rho GTPase activating p... 30 5.7 AL833975-1|CAD38819.1| 414|Homo sapiens hypothetical protein pr... 30 5.7 AK125358-1|BAC86144.1| 608|Homo sapiens protein ( Homo sapiens ... 30 5.7 X12794-1|CAA31282.1| 403|Homo sapiens protein ( Human v-erbA re... 29 9.9 BC084544-1|AAH84544.2| 404|Homo sapiens nuclear receptor subfam... 29 9.9 BC063018-1|AAH63018.2| 404|Homo sapiens nuclear receptor subfam... 29 9.9 BC002669-1|AAH02669.3| 404|Homo sapiens nuclear receptor subfam... 29 9.9 >Z69744-1|CAA93625.1| 4005|Homo sapiens ALL-1 protein protein. Length = 4005 Score = 29.9 bits (64), Expect = 5.7 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -3 Query: 225 ENSSLP*PPLSKTKLFLQSAGSLVDHSSFLMIP 127 E SS P PPL LQ A S+ DH+ +LM P Sbjct: 589 ETSSSPPPPLLTPPPPLQPASSISDHTPWLMPP 621 >BC080195-1|AAH80195.1| 881|Homo sapiens Rho GTPase activating protein 17 protein. Length = 881 Score = 29.9 bits (64), Expect = 5.7 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +3 Query: 312 HVTPTFGGALSPGRNSTAMPGG-APPSMASRA 404 H++P F L P ST +P G PP +SRA Sbjct: 518 HISPAFQPPLPPTDGSTVVPAGPEPPPQSSRA 549 >AL833975-1|CAD38819.1| 414|Homo sapiens hypothetical protein protein. Length = 414 Score = 29.9 bits (64), Expect = 5.7 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +3 Query: 312 HVTPTFGGALSPGRNSTAMPGG-APPSMASRA 404 H++P F L P ST +P G PP +SRA Sbjct: 51 HISPAFQPPLPPTDGSTVVPAGPEPPPQSSRA 82 >AK125358-1|BAC86144.1| 608|Homo sapiens protein ( Homo sapiens cDNA FLJ43368 fis, clone NT2RP8000483, moderately similar to Rattus norvegicus mRNA for Nadrin E2. ). Length = 608 Score = 29.9 bits (64), Expect = 5.7 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +3 Query: 312 HVTPTFGGALSPGRNSTAMPGG-APPSMASRA 404 H++P F L P ST +P G PP +SRA Sbjct: 245 HISPAFQPPLPPTDGSTVVPAGPEPPPQSSRA 276 >X12794-1|CAA31282.1| 403|Homo sapiens protein ( Human v-erbA related ear-2 gene. ). Length = 403 Score = 29.1 bits (62), Expect = 9.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 388 DGGAPPGIAVELRPGDKAPPKVGVTC 311 D +PPG A + PGD+ P + V C Sbjct: 31 DSASPPGAASDAEPGDEERPGLQVDC 56 >BC084544-1|AAH84544.2| 404|Homo sapiens nuclear receptor subfamily 2, group F, member 6 protein. Length = 404 Score = 29.1 bits (62), Expect = 9.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 388 DGGAPPGIAVELRPGDKAPPKVGVTC 311 D +PPG A + PGD+ P + V C Sbjct: 31 DSASPPGAASDAEPGDEERPGLQVDC 56 >BC063018-1|AAH63018.2| 404|Homo sapiens nuclear receptor subfamily 2, group F, member 6 protein. Length = 404 Score = 29.1 bits (62), Expect = 9.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 388 DGGAPPGIAVELRPGDKAPPKVGVTC 311 D +PPG A + PGD+ P + V C Sbjct: 31 DSASPPGAASDAEPGDEERPGLQVDC 56 >BC002669-1|AAH02669.3| 404|Homo sapiens nuclear receptor subfamily 2, group F, member 6 protein. Length = 404 Score = 29.1 bits (62), Expect = 9.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 388 DGGAPPGIAVELRPGDKAPPKVGVTC 311 D +PPG A + PGD+ P + V C Sbjct: 31 DSASPPGAASDAEPGDEERPGLQVDC 56 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 70,281,544 Number of Sequences: 237096 Number of extensions: 1339727 Number of successful extensions: 3092 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3092 length of database: 76,859,062 effective HSP length: 85 effective length of database: 56,705,902 effective search space used: 4990119376 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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