Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G01f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69744-1|CAA93625.1| 4005|Homo sapiens ALL-1 protein protein.          30   5.7  
BC080195-1|AAH80195.1|  881|Homo sapiens Rho GTPase activating p...    30   5.7  
AL833975-1|CAD38819.1|  414|Homo sapiens hypothetical protein pr...    30   5.7  
AK125358-1|BAC86144.1|  608|Homo sapiens protein ( Homo sapiens ...    30   5.7  
X12794-1|CAA31282.1|  403|Homo sapiens protein ( Human v-erbA re...    29   9.9  
BC084544-1|AAH84544.2|  404|Homo sapiens nuclear receptor subfam...    29   9.9  
BC063018-1|AAH63018.2|  404|Homo sapiens nuclear receptor subfam...    29   9.9  
BC002669-1|AAH02669.3|  404|Homo sapiens nuclear receptor subfam...    29   9.9  

>Z69744-1|CAA93625.1| 4005|Homo sapiens ALL-1 protein protein.
          Length = 4005

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 225 ENSSLP*PPLSKTKLFLQSAGSLVDHSSFLMIP 127
           E SS P PPL      LQ A S+ DH+ +LM P
Sbjct: 589 ETSSSPPPPLLTPPPPLQPASSISDHTPWLMPP 621


>BC080195-1|AAH80195.1|  881|Homo sapiens Rho GTPase activating
           protein 17 protein.
          Length = 881

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 312 HVTPTFGGALSPGRNSTAMPGG-APPSMASRA 404
           H++P F   L P   ST +P G  PP  +SRA
Sbjct: 518 HISPAFQPPLPPTDGSTVVPAGPEPPPQSSRA 549


>AL833975-1|CAD38819.1|  414|Homo sapiens hypothetical protein
           protein.
          Length = 414

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 312 HVTPTFGGALSPGRNSTAMPGG-APPSMASRA 404
           H++P F   L P   ST +P G  PP  +SRA
Sbjct: 51  HISPAFQPPLPPTDGSTVVPAGPEPPPQSSRA 82


>AK125358-1|BAC86144.1|  608|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43368 fis, clone NT2RP8000483, moderately
           similar to Rattus norvegicus mRNA for Nadrin E2. ).
          Length = 608

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 312 HVTPTFGGALSPGRNSTAMPGG-APPSMASRA 404
           H++P F   L P   ST +P G  PP  +SRA
Sbjct: 245 HISPAFQPPLPPTDGSTVVPAGPEPPPQSSRA 276


>X12794-1|CAA31282.1|  403|Homo sapiens protein ( Human v-erbA
           related ear-2 gene. ).
          Length = 403

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 388 DGGAPPGIAVELRPGDKAPPKVGVTC 311
           D  +PPG A +  PGD+  P + V C
Sbjct: 31  DSASPPGAASDAEPGDEERPGLQVDC 56


>BC084544-1|AAH84544.2|  404|Homo sapiens nuclear receptor subfamily
           2, group F, member 6 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 388 DGGAPPGIAVELRPGDKAPPKVGVTC 311
           D  +PPG A +  PGD+  P + V C
Sbjct: 31  DSASPPGAASDAEPGDEERPGLQVDC 56


>BC063018-1|AAH63018.2|  404|Homo sapiens nuclear receptor subfamily
           2, group F, member 6 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 388 DGGAPPGIAVELRPGDKAPPKVGVTC 311
           D  +PPG A +  PGD+  P + V C
Sbjct: 31  DSASPPGAASDAEPGDEERPGLQVDC 56


>BC002669-1|AAH02669.3|  404|Homo sapiens nuclear receptor subfamily
           2, group F, member 6 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 388 DGGAPPGIAVELRPGDKAPPKVGVTC 311
           D  +PPG A +  PGD+  P + V C
Sbjct: 31  DSASPPGAASDAEPGDEERPGLQVDC 56


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,281,544
Number of Sequences: 237096
Number of extensions: 1339727
Number of successful extensions: 3092
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3092
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)