Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29094-4|CAA82344.2|  507|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>Z29094-4|CAA82344.2|  507|Caenorhabditis elegans Hypothetical
           protein C07A9.6 protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 74  WLGFIIMRPSDPFICSPIGIIRKDE*STKLPALCRNSLVLDKGGYGKLEFST 229
           WL  II +PSD  I   +G +     +T +PA   NS +   G +GKL+  T
Sbjct: 290 WLEDIIEKPSDGLIVFSLGTVSN---TTNMPAQMINSFL---GAFGKLKTYT 335


>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical protein
            C03D6.4 protein.
          Length = 1390

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 327  FGGALSPGRNSTAMPGGAPPSMASRATLFGQRAFAD 434
            FGG  +P  N++   GGA  + A  +++FG  A A+
Sbjct: 1344 FGGGATPQTNTSIFGGGANTTPAPTSSVFGGGASAN 1379


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 315 VTPTFGGALSPGRNSTAMPGGAPP 386
           V P   GA  PG+    MPG  PP
Sbjct: 277 VAPGMPGAFPPGQGGPGMPGSFPP 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,867,365
Number of Sequences: 27780
Number of extensions: 208518
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)