Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308G01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   1.9  
At5g09320.1 68418.m01080 vacuolar sorting protein 9 domain-conta...    27   7.7  

>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 318 TPTFGGALSPGRNSTAMPGGAPPSMASRAT 407
           TPT GG+  P   +T  PGG+PPS  +  T
Sbjct: 474 TPTPGGS-PPSSPTTPTPGGSPPSSPTTPT 502



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 318 TPTFGGALSPGRNSTAMPGGAPPS 389
           TPT GG+  P   +T  PGG+PPS
Sbjct: 487 TPTPGGS-PPSSPTTPTPGGSPPS 509



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 318 TPTFGGALSPGRNSTAMPGGAPPS 389
           TPT GG+  P   +T  PGG+PPS
Sbjct: 500 TPTPGGS-PPSSPTTPSPGGSPPS 522


>At5g09320.1 68418.m01080 vacuolar sorting protein 9
           domain-containing protein / VPS9 domain-containing
           protein contains similarity to Rab5 GDP/GTP exchange
           factor, Rabex5 [Bos taurus] gi|2558516|emb|CAA04545;
           contains Pfam profile PF02204: Vacuolar sorting protein
           9 (VPS9) domain
          Length = 712

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 180 FLQSAGSLVDHSSFLMIPIGEQMNGSDGLIII 85
           F+QS G   D +SF ++ +G + NG  GL  I
Sbjct: 651 FMQSIGYEPDRASFRVLVLGLESNGEMGLSAI 682


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,239,809
Number of Sequences: 28952
Number of extensions: 188022
Number of successful extensions: 438
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)