Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308F12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 230 6e-61
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 56 2e-08
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 30 1.3
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) 29 3.1
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) 27 9.4
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 230 bits (562), Expect = 6e-61
Identities = 108/155 (69%), Positives = 124/155 (80%)
Frame = +3
Query: 57 PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 236
P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE TRK RII
Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63
Query: 237 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 416
DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK + TE E+ I+NK
Sbjct: 64 DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123
Query: 417 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLAC 521
KRS RK AR+ AKV +EEQF TGRL AC
Sbjct: 124 KRSNHCTRKLEARKANAKVAPGMEEQFVTGRLYAC 158
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/77 (31%), Positives = 47/77 (61%)
Frame = +3
Query: 117 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 296
P++I ++ GG+TK +ALR++ G ++ S+ + I+ V+++ +N E + +VK
Sbjct: 37 PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96
Query: 297 AIVVVDATPFRQWYESH 347
+IV VD PF W++ +
Sbjct: 97 SIVQVDNKPFEDWFQEY 113
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 33 RATGGKRAPIRKKRKYELGRPAANTRLGP 119
R GG R P+++ +E +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 372 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 509
+ AKL + EE II K+ + TA + ++ K++ ALE +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746
>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 216 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 329
T++ +I D++ N N VR +TL+ NA +++D F+
Sbjct: 18 TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53
>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
Length = 530
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -2
Query: 346 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 206
CD+ HC + T+T+ + +V + + ++ ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494
>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 414 KKRSQKTARKYLARQRLAKVEGALEE 491
K+R QK + Y RQR ++ +LEE
Sbjct: 15 KRRKQKATKSYAERQRRTRINKSLEE 40
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 215 NSQNPYH*CCV*CI*Q*-IGAYKDPCQECNCCSRCNSI 325
+S YH C C+ I Y DP EC CS+C+ +
Sbjct: 192 DSLEVYHECFGGCVGTLEIELYTDPYAECVTCSQCDGV 229
>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
Length = 717
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 470 LSKTLPCQVFSCCLLTSLLVD 408
+ K+LP + SC LLTSL++D
Sbjct: 523 IGKSLPLLINSCTLLTSLVLD 543
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 30 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYR 167
RR GG R+P + R+ R R P RSR G+ + R
Sbjct: 104 RRRYGGGRSPSPRGRRRSRSRSPVRRRRSPSLERRSRSRSGSRERR 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,203
Number of Sequences: 59808
Number of extensions: 338603
Number of successful extensions: 912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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