Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   213   6e-56
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   208   2e-54
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   1.9  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   2.5  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   4.4  
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    27   7.7  
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i...    27   7.7  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  213 bits (520), Expect = 6e-56
 Identities = 111/184 (60%), Positives = 133/184 (72%), Gaps = 11/184 (5%)
 Frame = +3

Query: 3   GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRL 179
           GISRD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALRL
Sbjct: 2   GISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRL 61

Query: 180 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 359
           DTGN+SWGSE +TRKTR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY + 
Sbjct: 62  DTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVE 121

Query: 360 LGR-KKGAKLT-----EAEEAII----NKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 509
           LGR KK A  T     E EEA +      K+S    RK  +RQ    ++  +E+QF +GR
Sbjct: 122 LGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGR 181

Query: 510 LLAC 521
           LLAC
Sbjct: 182 LLAC 185


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  208 bits (508), Expect = 2e-54
 Identities = 107/174 (61%), Positives = 124/174 (71%), Gaps = 1/174 (0%)
 Frame = +3

Query: 3   GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRL 179
           GISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALRL
Sbjct: 2   GISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRL 61

Query: 180 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 359
           DTGNFSWGSE  TRKTRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY + 
Sbjct: 62  DTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVD 121

Query: 360 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLAC 521
           +GRKK  +    EE     K+S    RK   RQ    ++  LEEQF +GRLLAC
Sbjct: 122 IGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLAC 171


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 267 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 395
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 147 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 308
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 277 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 146
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 342 SHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 491
           SH  +P  +K+G K     +A + KKR  +   +     RLA   G L E
Sbjct: 190 SHGGIPAPKKRGRKTKINNDAAVAKKRKIERKEEVDRFARLAAPSGLLNE 239


>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
           identical to Swiss-Prot:Q9SWI1 phytochrome kinase
           substrate 1 [Arabidopsis thaliana]
          Length = 439

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 54  APIRKKRKYELGRPAANTRLGPQRIHSVRSRGGN 155
           +P+R+ R  ++ R     +  PQR  S  S GGN
Sbjct: 339 SPVRRNRPTQIPRIPITAKSAPQRRKSSSSSGGN 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,208,657
Number of Sequences: 28952
Number of extensions: 221405
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)