Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F11f
         (477 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    25   0.36 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   1.4  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   7.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.7  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 187 LVQPDGVHRIVEYTSDKVNGFNANVRYEGHPVAQPAKI 300
           +V+PD +H ++E    K+   N+N   EG    + ++I
Sbjct: 218 IVRPDLIHLLMEARKGKLKHDNSNEGGEGFATVEESEI 255


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 401 PTAHPSLRSHTPPQLPRSPTT 463
           P    +LR H P + PR+P T
Sbjct: 103 PIVRCALRKHKPNRKPRTPFT 123


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 469 EHCCRRSWQLGRCMRP*RWVRCRRSWQQEHC 377
           EHC R+  Q+    R  R     R +  EHC
Sbjct: 41  EHCDRQFVQVANLRRHLRVHTGERPYGCEHC 71


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 438 GGVCDLSDG 412
           GGVC +SDG
Sbjct: 388 GGVCRISDG 396


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 469 EHCCRRSWQLGRCMRP*RWVRCRRSWQQEHC 377
           EHC R+  Q+    R  R     R +  EHC
Sbjct: 194 EHCDRQFVQVANLRRHLRVHTGERPYGCEHC 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,347
Number of Sequences: 336
Number of extensions: 1142
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)