Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F11f
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   3.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   7.9  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    25   7.9  

>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 424 P*RWVRCRRSWQQEHCRRSWL 362
           P  W+  ++SW++E  + SWL
Sbjct: 233 PDNWLERQKSWEEEKEQESWL 253


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 395 RSPTAHPSLRSHTPPQLPRSP 457
           +SP + PSL S  PP  P+ P
Sbjct: 182 KSPPSAPSLPSAVPPMPPKVP 202


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 136 KQQKESRAGDAVQGFYSLVQPDG 204
           K  ++S  GD++ G YS+++  G
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSG 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,605
Number of Sequences: 5004
Number of extensions: 16901
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)