Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F11f
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0138 + 13325418-13325954                                         31   0.48 
10_05_0018 + 8041813-8041908,8042419-8042667                           28   4.5  
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535...    28   4.5  
07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197...    27   5.9  
02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415...    27   7.8  

>10_07_0138 + 13325418-13325954
          Length = 178

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 460 CRRSWQLGRCMRP*RWVRCRRSWQQEHCRRSW 365
           C R W+  R  R     R RRSW++  C R W
Sbjct: 87  CSRRWRRSRRWRSRCSRRWRRSWRRRRCSRRW 118


>10_05_0018 + 8041813-8041908,8042419-8042667
          Length = 114

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -1

Query: 57  NWKS*SGHRQGEDDEKLSC 1
           +W++  G ++GE+DE++SC
Sbjct: 53  SWENRQGRKKGEEDERVSC 71


>06_01_0728 -
           5356400-5356676,5356888-5357090,5357181-5357474,
           5357940-5358063,5358157-5359496
          Length = 745

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 380 VLLLPRS---PTAHPSLRSHTPPQLPRSPTTVLP 472
           VLL+P     P  HP+   H P Q P +PTT LP
Sbjct: 18  VLLIPPDHPQPQLHPN--HHQPQQPPMTPTTPLP 49


>07_03_0910 -
           22519006-22519159,22519300-22519355,22519433-22519702,
           22519808-22519986,22520146-22520374,22520985-22521180,
           22521728-22521818,22521921-22521975,22522812-22522902,
           22523366-22523424,22524000-22524050
          Length = 476

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 392 PRSPTAHPSLRSHTPPQLPRSPTTVLP 472
           P  P A PS+   +PPQ  +SP    P
Sbjct: 183 PHQPKAQPSVPKVSPPQPEKSPPNATP 209


>02_02_0444 +
           10340927-10341063,10341157-10341241,10341480-10341537,
           10343738-10345885,10345943-10346388
          Length = 957

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 477 GXGSTVVGDLGNWGGVCDLSDGCAVGDLGN 388
           G G  V G+L +  G   L DG +VG LGN
Sbjct: 889 GGGEVVGGELDDGDGGGWLYDGASVGGLGN 918


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,192,292
Number of Sequences: 37544
Number of extensions: 136748
Number of successful extensions: 671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)