Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F11f
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_41923| Best HMM Match : Lentiviral_Tat (HMM E-Value=3.8)            27   6.0  
SB_28166| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)             27   6.0  
SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)                   27   6.0  

>SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 392 PRSPTAHPSLRSHTPPQLPRSPTTVL 469
           PRSPTAH +  +H  P  P  P+  +
Sbjct: 222 PRSPTAHVTNGNHLSPSNPNRPSNAV 247


>SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 389 LPRSP-TAHPSLRSHTPPQLPRSPT 460
           LPR+P +A   + S T PQ+P SPT
Sbjct: 300 LPRTPLSASTFIPSETTPQIPESPT 324


>SB_41923| Best HMM Match : Lentiviral_Tat (HMM E-Value=3.8)
          Length = 450

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 88  HYDFEYSVHDQQSGDIKQQKESRAGDAVQGFYSLVQPDGV 207
           H + EY  + + +  IK   E  +   +Q FY L QP GV
Sbjct: 183 HKNPEYDDYRRITTTIKDSSEKESDHGLQEFYFLNQPHGV 222


>SB_28166| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)
          Length = 279

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 61  EYAEHEAPAHYDFEYSVH 114
           E A+H+ PA+YDFE + H
Sbjct: 3   EKAQHKLPANYDFEKAQH 20


>SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 311

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 389 LPRSPTAHPSLRSHTPPQLPRSPTTVLP 472
           +PR P+ H       PPQLP S  T+ P
Sbjct: 210 IPRPPSLHRDPPPSLPPQLPLSLPTLAP 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,092,385
Number of Sequences: 59808
Number of extensions: 147177
Number of successful extensions: 681
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)