Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F11f
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF016675-4|AAB66137.1|  356|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical
           protein F58A4.7c protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +2

Query: 380 VLLLPRSPTAHPSLRS----HTPPQLPRSPTTVL 469
           +L L  SPT+  SL S    H PP LP   TTV+
Sbjct: 279 LLTLNGSPTSSESLASQRIFHPPPTLPSLETTVI 312


>Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical
           protein F58A4.7b protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +2

Query: 380 VLLLPRSPTAHPSLRS----HTPPQLPRSPTTVL 469
           +L L  SPT+  SL S    H PP LP   TTV+
Sbjct: 281 LLTLNGSPTSSESLASQRIFHPPPTLPSLETTVI 314


>Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical
           protein F58A4.7a protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +2

Query: 380 VLLLPRSPTAHPSLRS----HTPPQLPRSPTTVL 469
           +L L  SPT+  SL S    H PP LP   TTV+
Sbjct: 279 LLTLNGSPTSSESLASQRIFHPPPTLPSLETTVI 312


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 64  YAEHEAPAHYDFEYSVHDQQSGDIKQQKESRAGDAVQGFYSLVQPDGVHRI 216
           Y+       YDF  S+  +    +K+Q E  A   V   Y L +PDG  ++
Sbjct: 162 YSMRNTQEKYDFGQSLKQETYEALKEQLEKLACKIVNNLY-LSEPDGPFQV 211


>U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical
           protein C06E4.8 protein.
          Length = 285

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 145 SVA*CLRFVGRERSTRSRSVRGLRAQHIPELEELK 41
           ++A   R +G++R    + ++ +RA+H  E EEL+
Sbjct: 39  TIAELRRQIGKQRKHYEQLIKNVRAKHCKEKEELE 73


>AF016675-4|AAB66137.1|  356|Caenorhabditis elegans Hypothetical
           protein T27B7.5 protein.
          Length = 356

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 351 CRTRSQDRLQCSCCQDRLQR 410
           C  RS+D+L CSC   RL++
Sbjct: 95  CMARSEDKLVCSCKPCRLRK 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,209,944
Number of Sequences: 27780
Number of extensions: 106944
Number of successful extensions: 449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)