Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F11f
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   2.9  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   3.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   6.8  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   9.0  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   9.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.0  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 372 RLQCSCCQDRLQRTHR 419
           R+ C+CC  R++R ++
Sbjct: 403 RILCACCPGRVRRRYQ 418


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 416 SLRSHTPPQLPRSPTT 463
           +LR H P + PR+P T
Sbjct: 2   TLRKHKPNRKPRTPFT 17


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 396 DRLQRTHR*GRIHRPSCQDRLQQ 464
           +++ R HR  R++R +  DR+ +
Sbjct: 367 NKMNRMHRMNRVNRVNRMDRMDR 389


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 460 CRRSWQLGRCM 428
           C  +WQ G+C+
Sbjct: 125 CEVAWQFGKCI 135


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 460 CRRSWQLGRCM 428
           C  +WQ G+C+
Sbjct: 99  CEVAWQFGKCI 109


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 389 LPRSPTAHPSLRSHTPPQLPRSP 457
           +P S    PS+   +PP+ P +P
Sbjct: 123 VPESRDGPPSVSLSSPPREPGTP 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,202
Number of Sequences: 438
Number of extensions: 1392
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)