Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F11f
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80070.1 68414.m09373 splicing factor, putative strong simila...    28   3.8  
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p...    27   6.6  
At2g27390.1 68415.m03306 proline-rich family protein contains pr...    23   8.5  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    27   8.7  
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t...    27   8.7  

>At1g80070.1 68414.m09373 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 386 LLPRSPTAHPSLRSHTPPQLPRSPTTVLP 472
           ++P  P AHPS  +  PP  P  P    P
Sbjct: 19  MMPPPPAAHPSYTALPPPSNPTPPVEPTP 47


>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
           subunit, putative contains 5 WD-40 repeats (PF00400);
           similar to katanin p80 subunit (GI:3005601)
           [Strongylocentrotus purpuratus]
          Length = 1180

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 386 LLPRSPTAHPSLRSHTPPQLPRSPTT 463
           LLP SPT         PP++ RSP+T
Sbjct: 488 LLPESPTDEAKCMLLKPPRVQRSPST 513


>At2g27390.1 68415.m03306 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 23.4 bits (48), Expect(2) = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 386 LLPRSPTAHPSLRSHTPPQLP 448
           LLP SP   P     +PP+LP
Sbjct: 36  LLPLSPPPSPPPSPSSPPRLP 56



 Score = 21.8 bits (44), Expect(2) = 8.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 434 PPQLPRSPTTVLP 472
           PP LPR P  +LP
Sbjct: 82  PPPLPRLPPPLLP 94


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 392 PRSPTAHPSLRSHTPPQLPRSPT 460
           P  PT  PS+ S TPP  P  PT
Sbjct: 99  PPPPTPTPSVPSPTPPVSPPPPT 121



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 392 PRSPTAHPSLRSHTPPQLPRSPT 460
           P  PT  PS+ S TPP  P  PT
Sbjct: 117 PPPPTPTPSVPSPTPPVSPPPPT 139



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 392 PRSPTAHPSLRSHTPPQLPRSPT 460
           P  PT  PS+ S TPP  P  PT
Sbjct: 135 PPPPTPTPSVPSPTPPVSPPPPT 157


>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
           hypothetical protein GI:4204272 from [Arabidopsis
           thaliana] contains weak PHD zinc finger motifs contains
           weak PHD zinc finger motifs DC1 domain, a divergent
           protein kinase C domain of unknown function.
          Length = 684

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 369 DRLQCSCCQDRLQRTH 416
           D  +C CCQD L++ H
Sbjct: 204 DHRKCKCCQDPLKKVH 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,890,280
Number of Sequences: 28952
Number of extensions: 97030
Number of successful extensions: 408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)